Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0216300-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:6115552:6118730:1 gene:Os03g0216300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0216300-01);Hypothetical conserved gene. (Os03t0216300-02)
Sequence

TACAACGCCCTCATGTCCGCCTACTCCCGCGCCGGCCGCCACGGCGAGGTCCTCCGCCTC
TTCCGCTCCCTGCCCTTCGCCCCCACGGCGCCGCTCTTCACCACGCTCATCTCCTCCCTC
GCCGCCTCAGGGCGGCCCCTCGCCGCGCGCGCCGCCTTCGCCTCGCTCCTCAAGTCCGGC
GTCCCGCCCACCGCCTCCGCCTTCACCGCGCTGCTCAGGTCGTCGAGCGACGCGCTCGAC
TTCGTGGACAGCGTGTTCCGCGCCATGGAGGCCCTGGGCTGCTCCCCGGATGCCGCCGTC
TACAACTGGGTCATCTCGATGCTCTGCGACTTCCAGCTGGTGCAGGAGGCCCTGGGGTTC
CTCGACCACATGCTCGAGAACGGACCGCGACCCACCGCTCGCTCCTTCACAGCGATTCTA
CGTGCTTACTGCGAGCAGGGAAGGTTCTTCGACGCAGGGAGATTAGTCGATACGATGATC
CAGAACGGTTGCCCACCGGATGTAGTATCATACACCGTGCTCATTGAGGGGCTCTGCCGT
GTTGGGGAATTCAGCACGGTGGAAATGATCTTAGGTGAAAGTGAGTCGCAAGGGTGGATG
CCAACTGCTGTTACATATAATATTTACATGTCTGGCTTGTGCAGGATGGGGTTCTTGGAT
GAGGCATTTCGTCAAGTAGATATCATGCGCGGCAGAGGGCTGTCCGTGACAGCTGAGACA
GTGCATATTCTCTTCGATTGTTTGTGCCGAAATGCAATGTTTTCAGAAGCAGTGTGCTTG
CTGGAACATAGTGAAGAGCTGGGCTGGGATGTTGATGTGTTTTGCTATAACACTCTGATG
AGTAGGCTTTGTGACGTTGATGATTTTGCCAGGGTCTTGAAGCTGCTGGTTGATCTGTTG
AAGAAGGGCATTGGACCAGATAAGTTTAGTTTTACCATTGCAATTCGGAGCCTCTGCCGA
GCTGGGAAACTTCGGCTGGCAAAGTGCCTTATAGAAAATAAGGGGATTAAGTATGATGTT
GTGGCTTTCAATACCTTGATTCATGGGTTCTGCATAGCTGGGGATTTAGACAGGGTTCAG
CAAACTCGTACAGATATGATCAATAGGGATGTTATTCCAAATAATTTTACTGATGCAATG
CTGATTGATAGTTTATGTAAAGAGCGAAAGTTTGGCGAGGCAAAAAGATTTGTTCTTGAC
TCTTTGGTAAATGGTTTGGTGCCTGATCATCTTATTCGTCTGAATAATTGGTTGGTAAAA
GCAAAAAAAATGACACTGTTACTGAAGTTACTCTATGAAATACGCTGTAAAGGAATTGTG
GTAGATACTTCCATTATCAGTCCATTGGTTAGGGTATTTTGCTGGGAGGGGTACTGTCGG
CGTGACAATTTCTATCAAATTTCACCTATACTTGACATTATAGTAACATATGTCGAGCAG
TAA

Peptide Sequence

PEP ID

Os03t0216300-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:6115552:6118730:1 gene:Os03g0216300 transcript:Os03t0216300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0216300-01);Hypothetical conserved gene. (Os03t0216300-02)
Sequence

YNALMSAYSRAGRHGEVLRLFRSLPFAPTAPLFTTLISSLAASGRPLAARAAFASLLKSG
VPPTASAFTALLRSSSDALDFVDSVFRAMEALGCSPDAAVYNWVISMLCDFQLVQEALGF
LDHMLENGPRPTARSFTAILRAYCEQGRFFDAGRLVDTMIQNGCPPDVVSYTVLIEGLCR
VGEFSTVEMILGESESQGWMPTAVTYNIYMSGLCRMGFLDEAFRQVDIMRGRGLSVTAET
VHILFDCLCRNAMFSEAVCLLEHSEELGWDVDVFCYNTLMSRLCDVDDFARVLKLLVDLL
KKGIGPDKFSFTIAIRSLCRAGKLRLAKCLIENKGIKYDVVAFNTLIHGFCIAGDLDRVQ
QTRTDMINRDVIPNNFTDAMLIDSLCKERKFGEAKRFVLDSLVNGLVPDHLIRLNNWLVK
AKKMTLLLKLLYEIRCKGIVVDTSIISPLVRVFCWEGYCRRDNFYQISPILDIIVTYVEQ

Transcript Sequence

Transcript ID

Os03t0216300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:6115552:6118730:1 gene:Os03g0216300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0216300-01);Hypothetical conserved gene. (Os03t0216300-02)
Sequence

CTACAACGCCCTCATGTCCGCCTACTCCCGCGCCGGCCGCCACGGCGAGGTCCTCCGCCT
CTTCCGCTCCCTGCCCTTCGCCCCCACGGCGCCGCTCTTCACCACGCTCATCTCCTCCCT
CGCCGCCTCAGGGCGGCCCCTCGCCGCGCGCGCCGCCTTCGCCTCGCTCCTCAAGTCCGG
CGTCCCGCCCACCGCCTCCGCCTTCACCGCGCTGCTCAGGTCGTCGAGCGACGCGCTCGA
CTTCGTGGACAGCGTGTTCCGCGCCATGGAGGCCCTGGGCTGCTCCCCGGATGCCGCCGT
CTACAACTGGGTCATCTCGATGCTCTGCGACTTCCAGCTGGTGCAGGAGGCCCTGGGGTT
CCTCGACCACATGCTCGAGAACGGACCGCGACCCACCGCTCGCTCCTTCACAGCGATTCT
ACGTGCTTACTGCGAGCAGGGAAGGTTCTTCGACGCAGGGAGATTAGTCGATACGATGAT
CCAGAACGGTTGCCCACCGGATGTAGTATCATACACCGTGCTCATTGAGGGGCTCTGCCG
TGTTGGGGAATTCAGCACGGTGGAAATGATCTTAGGTGAAAGTGAGTCGCAAGGGTGGAT
GCCAACTGCTGTTACATATAATATTTACATGTCTGGCTTGTGCAGGATGGGGTTCTTGGA
TGAGGCATTTCGTCAAGTAGATATCATGCGCGGCAGAGGGCTGTCCGTGACAGCTGAGAC
AGTGCATATTCTCTTCGATTGTTTGTGCCGAAATGCAATGTTTTCAGAAGCAGTGTGCTT
GCTGGAACATAGTGAAGAGCTGGGCTGGGATGTTGATGTGTTTTGCTATAACACTCTGAT
GAGTAGGCTTTGTGACGTTGATGATTTTGCCAGGGTCTTGAAGCTGCTGGTTGATCTGTT
GAAGAAGGGCATTGGACCAGATAAGTTTAGTTTTACCATTGCAATTCGGAGCCTCTGCCG
AGCTGGGAAACTTCGGCTGGCAAAGTGCCTTATAGAAAATAAGGGGATTAAGTATGATGT
TGTGGCTTTCAATACCTTGATTCATGGGTTCTGCATAGCTGGGGATTTAGACAGGGTTCA
GCAAACTCGTACAGATATGATCAATAGGGATGTTATTCCAAATAATTTTACTGATGCAAT
GCTGATTGATAGTTTATGTAAAGAGCGAAAGTTTGGCGAGGCAAAAAGATTTGTTCTTGA
CTCTTTGGTAAATGGTTTGGTGCCTGATCATCTTATTCGTCTGAATAATTGGTTGGTAAA
AGCAAAAAAAATGACACTGTTACTGAAGTTACTCTATGAAATACGCTGTAAAGGAATTGT
GGTAGATACTTCCATTATCAGTCCATTGGTTAGGGTATTTTGCTGGGAGGGGTACTGTCG
GCGTGACAATTTCTATCAAATTTCACCTATACTTGACATTATAGTAACATATGTCGAGCA
GTAATGGAGCGCAGAGCAGTGTGATTATGTGAAACTCATTTTGGTTTTATTCTCTGCTAA
GCAAACAATGGTTGACAATTGCTACATCAGAGATAATCATCTTTCATCAGGTCAGTTGGT
GCCAGAAAATATATTATCTATAATATTAATGTCTTCACAAGATATTAATCTTTGTTAGGT
TTTCAGGGGAGGAATAGCTGAGTTTGAACAAATGACACTTAGATTTGAGGAGTCCATTCG
AAGCTATCAAGTTTAAATGTGCTTTTAGATAAATAATGGACAGAGAGGTATGCTTTTTTT
TGGGGGGGCTTGTTCTGTATTTACTCCCACAAGGGCAATCCCTATGCTGAAATCATTGTA
TTATACCACCTCTGTTTTTTTGTGAAAGAAAATCATTGTTGTACTAGATATTTTTGGAGA
TGACATGTCCTTTTGTTGTAATTTTGACTCTTCAATAGAAACTTCAATAAGCCCCAGGTT
CTTTTTAGAAAAACCGAATCTGACTTTCTTTTGTTTATTAATGGTGACAATCACCTAATG
GTCTGAAATGCCCTTCCCTTGAATAGGAGCCAGTGGTGACAAGTCATGGGTATGGCTAAT
ATGCTGGAAGGTGCACTTGTTGACATTATAAGTTCTCAACCAAGGTCTCTTCTGCATATA
CATATGAATGCAACCTTGGAAATGAAGGGTGGTCACGCATTTGTCAAGTGTACTCATCTG
ATAAGATGTCTGAGAGCATGTCTAGTATGAACACATTTGTTCATTCAACTTTGGATCATC
GATGTGAATTTATCATTTTAGCCGAGTAACAGGACCATCTTCGTTTTCATTTGGGGTGTG
GAAGGCTGGAAGCTGCTAGGGGCGCATCAACCTACTTAGATTTGCCTACCCATTTGGATG
ATGATAAATCACATGGGCTACACAATATACATTCGGTGTGCCCTACTTGGAAAGTGATGT
GCTGTTAGAATGAGAATGGCATAGGCATACTGTAATTAGCATAAGAGTTTGTTGGATGGA
CCTTGTAACTCCTGTCTCCTAAGTTCCCTGAGATGGCACTGTAATAGTAACTAGCACTTC
TGAGTCGTGTGTGGAGCTCTCAGACCTAACTTATTTGCTAGTAGATGAGTAGAGACACAG
AACTGCTTAGTGCTACTGTTTACTGCCTGAAACACAGTTCATTCTTCTGGTC