Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0214100-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:5979594:5983020:1 gene:Os03g0214100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:REPLICATION PROTEIN A 1 description:Replication protein A1. (Os03t0214100-01)
Sequence	ATGGATTCCGACGCGGCACCGTCAGTGACGCCGGGGGCGGTGGCGTTCGTCCTGGAGAAC GCGTCGCCGGACGCGGCCACCGGCGTGCCGGTGCCGGAGATCGTCCTCCAGGTCGTCGAC CTCAAGCCCATCGGCACCCGCTTCACTTTCTTGGCGAGCGATGGCAAGGACAAGATAAAG ACGATGCTTCTCACCCAGCTCGCTCCGGAGGTGCGCTCCGGCAACATCCAGAATCTCGGC GTCATCCGCGTCCTCGACTACACCTGCAACACCATCGGCGAAAAGCAGGAAAAGGTCTTG ATTATCACGAAGCTCGAGGTCGTGTTCAAGGCGCTGGATTCCGAGATCAAGTGCGAGGCC GAAAAGCAAGAGGAGAAGCCGGCGATTCTGTTGAGTCCCAAGGAGGAATCCGTGGTTCTC TCCAAGCCCACGAACGCGCCGCCACTTCCTCCGGTTGTGCTGAAGCCCAAGCAGGAGGTG AAGTCCGCGTCCCAGATCGTGAACGAGCAGCGCGGCAATGCTGCTCCTGCGGCGCGGTTG GCCATGACGAGAAGAGTTCATCCTTTGATCTCCCTGAACCCCTACCAGGGCAACTGGATC ATCAAGGTGCGTGTCACAAGCAAGGGCAACCTGAGGACGTACAAGAATGCTCGTGGTGAA GGCTGCGTCTTCAATGTGGAGCTCACTGATGTGGATGGCACCCAGATCCAGGCAACCATG TTCAACGAGGCTGCCAAGAAGTTCTATCCGATGTTTGAGCTGGGGAAGGTGTACTACATC TCCAAAGGATCTCTCAGAGTCGCCAACAAGCAGTTCAAGACTGTCCATAATGACTACGAG ATGACCCTGAATGAGAATGCTGTTGTTGAGGAAGCTGAGGGCGAAACTTTTATCCCACAG ATTCAGTACAACTTTGTCAAGATTGATCAGCTAGGGCCATATGTTGGTGGCAGGGAGCTA GTAGATGTTATTGGGGTTGTTCAGAGCGTATCTCCTACTCTTAGTGTTAGGAGGAAGATT GACAACGAGACGATTCCAAAGCGTGACATCGTTGTAGCGGATGACTCGAGCAAAACTGTA ACCATATCTCTTTGGAATGATCTTGCCACAACTACTGGTCAGGAGCTCTTGGACATGGTA GACTCTGCGCCTATCATTGCGATAAAGAGCCTAAAAGTATCTGACTTCCAAGGTTTGTCT CTGTCAACTGTGGGGAGAAGTACAATTGTAGTGAATCCTGACTTGCCTGAGGCAGAACAG CTCAGAGCTTGGTATGACTCTGAAGGCAAGGGTACTTCAATGGCATCAATTGGTTCAGAT ATGGGCGCATCAAGGGTTGGTGGCGCGAGATCCATGTACAGTGATAGAGTTTTTCTGTCT CACATCACAAGTGACCCCAACTTGGGTCAGGATAAGCCTGTGTTCTTCAGTCTGAATGCC TATATTAGCCTTATCAAGCCTGACCAAACCATGTGGTACCGAGCTTGCAAGACCTGCAAC AAGAAGGTGACTGAGGCAATTGGATCAGGATACTGGTGTGAAGGGTGCCAGAAGAATGAT GCTGAGTGCTCACTGAGGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCC TGGCTTTCTCTGTTCAATGATCAGGCAGAGAGGATTGTTGGCTGCAGTGCAGATGAGCTT GATCGGATTAGGAAGGAGGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACT TGGGTTCCTCACCTGTTCCGCGTCAGCGTAACTCAGAATGAGTACATGAATGAGAAGAGG CAGAGGATCACTGTGAGGAGTGAAGCTCCGGTAGACCACGCAGCTGAAGCCAAGTACATG CTCGAGGAGATAGCCAAGCTGACAGGTTGCTAG

Peptide Sequence

PEP ID	Os03t0214100-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:5979594:5983020:1 gene:Os03g0214100 transcript:Os03t0214100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:REPLICATION PROTEIN A 1 description:Replication protein A1. (Os03t0214100-01)
Sequence	MDSDAAPSVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPIGTRFTFLASDGKDKIK TMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEA EKQEEKPAILLSPKEESVVLSKPTNAPPLPPVVLKPKQEVKSASQIVNEQRGNAAPAARL AMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATM FNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGETFIPQ IQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTV TISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQ LRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNA YISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEA WLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKR QRITVRSEAPVDHAAEAKYMLEEIAKLTGC

Transcript Sequence

Transcript ID	Os03t0214100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:5979594:5983020:1 gene:Os03g0214100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:REPLICATION PROTEIN A 1 description:Replication protein A1. (Os03t0214100-01)
Sequence	ATTCTCCTCAACTCCAAACCATTTCCTCCCCATCGCCGCCGCCGCCGCAGCTGAATCTTC CCGCGTGAAGCCTTCAACTCGGCTCGGGGATGGATTCCGACGCGGCACCGTCAGTGACGC CGGGGGCGGTGGCGTTCGTCCTGGAGAACGCGTCGCCGGACGCGGCCACCGGCGTGCCGG TGCCGGAGATCGTCCTCCAGGTCGTCGACCTCAAGCCCATCGGCACCCGCTTCACTTTCT TGGCGAGCGATGGCAAGGACAAGATAAAGACGATGCTTCTCACCCAGCTCGCTCCGGAGG TGCGCTCCGGCAACATCCAGAATCTCGGCGTCATCCGCGTCCTCGACTACACCTGCAACA CCATCGGCGAAAAGCAGGAAAAGGTCTTGATTATCACGAAGCTCGAGGTCGTGTTCAAGG CGCTGGATTCCGAGATCAAGTGCGAGGCCGAAAAGCAAGAGGAGAAGCCGGCGATTCTGT TGAGTCCCAAGGAGGAATCCGTGGTTCTCTCCAAGCCCACGAACGCGCCGCCACTTCCTC CGGTTGTGCTGAAGCCCAAGCAGGAGGTGAAGTCCGCGTCCCAGATCGTGAACGAGCAGC GCGGCAATGCTGCTCCTGCGGCGCGGTTGGCCATGACGAGAAGAGTTCATCCTTTGATCT CCCTGAACCCCTACCAGGGCAACTGGATCATCAAGGTGCGTGTCACAAGCAAGGGCAACC TGAGGACGTACAAGAATGCTCGTGGTGAAGGCTGCGTCTTCAATGTGGAGCTCACTGATG TGGATGGCACCCAGATCCAGGCAACCATGTTCAACGAGGCTGCCAAGAAGTTCTATCCGA TGTTTGAGCTGGGGAAGGTGTACTACATCTCCAAAGGATCTCTCAGAGTCGCCAACAAGC AGTTCAAGACTGTCCATAATGACTACGAGATGACCCTGAATGAGAATGCTGTTGTTGAGG AAGCTGAGGGCGAAACTTTTATCCCACAGATTCAGTACAACTTTGTCAAGATTGATCAGC TAGGGCCATATGTTGGTGGCAGGGAGCTAGTAGATGTTATTGGGGTTGTTCAGAGCGTAT CTCCTACTCTTAGTGTTAGGAGGAAGATTGACAACGAGACGATTCCAAAGCGTGACATCG TTGTAGCGGATGACTCGAGCAAAACTGTAACCATATCTCTTTGGAATGATCTTGCCACAA CTACTGGTCAGGAGCTCTTGGACATGGTAGACTCTGCGCCTATCATTGCGATAAAGAGCC TAAAAGTATCTGACTTCCAAGGTTTGTCTCTGTCAACTGTGGGGAGAAGTACAATTGTAG TGAATCCTGACTTGCCTGAGGCAGAACAGCTCAGAGCTTGGTATGACTCTGAAGGCAAGG GTACTTCAATGGCATCAATTGGTTCAGATATGGGCGCATCAAGGGTTGGTGGCGCGAGAT CCATGTACAGTGATAGAGTTTTTCTGTCTCACATCACAAGTGACCCCAACTTGGGTCAGG ATAAGCCTGTGTTCTTCAGTCTGAATGCCTATATTAGCCTTATCAAGCCTGACCAAACCA TGTGGTACCGAGCTTGCAAGACCTGCAACAAGAAGGTGACTGAGGCAATTGGATCAGGAT ACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAGGTACATCATGGTCA TCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCTCTGTTCAATGATCAGGCAGAGA GGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAGGAGGGTGATGACA GTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTCACCTGTTCCGCGTCAGCGTAA CTCAGAATGAGTACATGAATGAGAAGAGGCAGAGGATCACTGTGAGGAGTGAAGCTCCGG TAGACCACGCAGCTGAAGCCAAGTACATGCTCGAGGAGATAGCCAAGCTGACAGGTTGCT AGATGCAAAATTATCGGTGAAGCTTGAAGAGTCCATGAAAGCTTAGATGCAGTGTTTCGG TGAAGCTTTTGAAGTGCCTGTCCATGAAAGCTTTTGAGGTGTAATAGCTTTATAAATTAT GGTTTCTCCACTGCAATTAGGTGCTAGCTAGTATTAGCCTTTTGTATTATAGGTAGATGC ATGCTTAACTTGTTTTTGAGGCAACCAGAATGTGATGCTGTTATACAGCCGTTTTATCTT C