Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0208600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:5669927:5671969:1 gene:Os03g0208600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0208600-01)
Sequence

ATGCCGCCCAAGCCAGAGCGGCGGCTGTTCCAGTACGTGAGCAAGCCGCGCAGGCCGGCG
CGGGAGCCTGCGCCGGCGCCCGAGGTCTGCGGCGGCGGCGGCGAAGAGGTGGTCGCGTCC
GACGCGGATGCCGACGCCGTGTACCGGATGGTCACGGCGGCGCCCACGCCGTCGGCGATG
GAGTCCGCGCTGTCCGCGTCGGGCGTCGCGATCTCCGCGCCGCTCCTCGACCTCGTGCTG
CGGAGGTTCCGGTTCGCGCACGGGGACCCGCTCCGCGCGCTGTCGCTCCTCTCCCTCGCG
CTCGACCGCCACGGCGTCGCCCCGTCCCCCTTCGCGCTCGACACCGCGCTCTACGTGCTC
GGCCGGGCGCGCCGGTTCGCGCACATGTGGGACCTGCTGCGATCCTCCCGCCGCCTCGTC
CCGGACGCCGTCACGCCGCGCACCGCCATGGTCGTCCTCGGCCGCGTCGCCAAGGTCTGC
TCCGTCCGCGAGACCGTCGACTCCTTCCGCCGCCTCTCGCGGATGTTGAGGGGCCGCGGG
GACGACCAGGAGGGCCAACTCTTCAACGCGCTGCTCCGCACGCTGTGCCAGGAGAAGAGC
ATGTCCGACGCGCGCAACGTCTACCACGCGCTCAAGTACGAGTTCAAGGTGAACCGCCAG
ACATTCAACATCCTGCTCTCCGGGTGGAAGTCAGCCGAGGACGCGGAGGCGTTCGTCGCC
GAGATGCGGGAGCTCGGCGTGGAGCCAGACCTGGTGACTTACAACAGTTTGATTGATTGT
CACTGCAAGAACCGGGGCGTGGAGAATGCCTACAAGCTGCTCGACGAAATGCGGGAGAAG
GACATTTCTCCCGATGTGATCACTTACACGAGCTTGATCGGCGGGCTGGGGTTGATTGGC
CAGCCAGACAAGGCAAAGCACTTGCTGAAGGAGATGCATGAGCTTGGATGCTACCCCGAT
GTACCTGCATACAACACGGCGATACGGAACTTTGTGATAGCAAAGAGGCTTGGTGATGCG
TTTGCATTGATGGAAGAAATGGCCTCGAAGGGACTCATGCCAAATGCCACAACCTATAAC
CTTTTCTTCCGTTGCTATTATTGGGCATACGACATTGGCAGTGCTTGGCAGTTGTATGAG
CGGATGCGTTCTGAAGGATGCTTCCCGAACACCCAGTCTTGCATGTTTATTGTGAGGTTA
TGTCATAGGCATGGGAGGGTTGCACAAGCACTAGAGCTGTGGAGTGATATGGTCAATAAT
GGGTTTGGGTCATTCACCTTGGTGTCTGATGTGTTGTTTGATCTGTTATGTGATGAAGGG
AAGCTGGATGAGGCTGAGAGGTGCTTCCATCAAATGATTGAGTTAGGGCAGAAGCCGAGC
AATGTTGCATTTAGAAGGATAAAGATACTCATGCAGCTTGCCAACCGTGAAGAATCTATT
GCCAGATTAACTGCTCAAATGGCACAGTTTGGACGGTTGGCGCCTGAGGATTGCCGAAGA
GTTGATCATACCTTGCAGAGCACACATCAAAGTAGTGATAGAACTGACACTGACACTATA
GTGAAACACAGCAACACATTTGAATCACGACGATGA

Peptide Sequence

PEP ID

Os03t0208600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:5669927:5671969:1 gene:Os03g0208600 transcript:Os03t0208600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0208600-01)
Sequence

MPPKPERRLFQYVSKPRRPAREPAPAPEVCGGGGEEVVASDADADAVYRMVTAAPTPSAM
ESALSASGVAISAPLLDLVLRRFRFAHGDPLRALSLLSLALDRHGVAPSPFALDTALYVL
GRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRETVDSFRRLSRMLRGRG
DDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNILLSGWKSAEDAEAFVA
EMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKDISPDVITYTSLIGGLGLIG
QPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKGLMPNATTYN
LFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALELWSDMVNN
GFGSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKPSNVAFRRIKILMQLANREESI
ARLTAQMAQFGRLAPEDCRRVDHTLQSTHQSSDRTDTDTIVKHSNTFESRR

Transcript Sequence

Transcript ID

Os03t0208600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:5669927:5671969:1 gene:Os03g0208600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0208600-01)
Sequence

CCCTTTGCAGTTTGCAGCCGGCGAAGCGCCGCCGCCATCGGAAAAAAAATGCCGCCCAAG
CCAGAGCGGCGGCTGTTCCAGTACGTGAGCAAGCCGCGCAGGCCGGCGCGGGAGCCTGCG
CCGGCGCCCGAGGTCTGCGGCGGCGGCGGCGAAGAGGTGGTCGCGTCCGACGCGGATGCC
GACGCCGTGTACCGGATGGTCACGGCGGCGCCCACGCCGTCGGCGATGGAGTCCGCGCTG
TCCGCGTCGGGCGTCGCGATCTCCGCGCCGCTCCTCGACCTCGTGCTGCGGAGGTTCCGG
TTCGCGCACGGGGACCCGCTCCGCGCGCTGTCGCTCCTCTCCCTCGCGCTCGACCGCCAC
GGCGTCGCCCCGTCCCCCTTCGCGCTCGACACCGCGCTCTACGTGCTCGGCCGGGCGCGC
CGGTTCGCGCACATGTGGGACCTGCTGCGATCCTCCCGCCGCCTCGTCCCGGACGCCGTC
ACGCCGCGCACCGCCATGGTCGTCCTCGGCCGCGTCGCCAAGGTCTGCTCCGTCCGCGAG
ACCGTCGACTCCTTCCGCCGCCTCTCGCGGATGTTGAGGGGCCGCGGGGACGACCAGGAG
GGCCAACTCTTCAACGCGCTGCTCCGCACGCTGTGCCAGGAGAAGAGCATGTCCGACGCG
CGCAACGTCTACCACGCGCTCAAGTACGAGTTCAAGGTGAACCGCCAGACATTCAACATC
CTGCTCTCCGGGTGGAAGTCAGCCGAGGACGCGGAGGCGTTCGTCGCCGAGATGCGGGAG
CTCGGCGTGGAGCCAGACCTGGTGACTTACAACAGTTTGATTGATTGTCACTGCAAGAAC
CGGGGCGTGGAGAATGCCTACAAGCTGCTCGACGAAATGCGGGAGAAGGACATTTCTCCC
GATGTGATCACTTACACGAGCTTGATCGGCGGGCTGGGGTTGATTGGCCAGCCAGACAAG
GCAAAGCACTTGCTGAAGGAGATGCATGAGCTTGGATGCTACCCCGATGTACCTGCATAC
AACACGGCGATACGGAACTTTGTGATAGCAAAGAGGCTTGGTGATGCGTTTGCATTGATG
GAAGAAATGGCCTCGAAGGGACTCATGCCAAATGCCACAACCTATAACCTTTTCTTCCGT
TGCTATTATTGGGCATACGACATTGGCAGTGCTTGGCAGTTGTATGAGCGGATGCGTTCT
GAAGGATGCTTCCCGAACACCCAGTCTTGCATGTTTATTGTGAGGTTATGTCATAGGCAT
GGGAGGGTTGCACAAGCACTAGAGCTGTGGAGTGATATGGTCAATAATGGGTTTGGGTCA
TTCACCTTGGTGTCTGATGTGTTGTTTGATCTGTTATGTGATGAAGGGAAGCTGGATGAG
GCTGAGAGGTGCTTCCATCAAATGATTGAGTTAGGGCAGAAGCCGAGCAATGTTGCATTT
AGAAGGATAAAGATACTCATGCAGCTTGCCAACCGTGAAGAATCTATTGCCAGATTAACT
GCTCAAATGGCACAGTTTGGACGGTTGGCGCCTGAGGATTGCCGAAGAGTTGATCATACC
TTGCAGAGCACACATCAAAGTAGTGATAGAACTGACACTGACACTATAGTGAAACACAGC
AACACATTTGAATCACGACGATGATAAATTGGGGAAGATAACTTGGTTGGACAGGGAAAT
AACTGAAAAAGAGAGTTCTGTACTTCGATATGTTGTTCAAGGTATGAAGTTCTGCATGTG
ATCTATAGATGGCCAACCATATTATTTTCAATATCAATAGAATATGTTTCTGCAAGTTCT
ACTGTGGAAGACCATTCTAGCATTGCCTTCTGTGCTGAGAGAAATGCTATTCCAGCATCA
TTGTTATCTGCAAGCTGAATGCCTGGATGTAAAATCACAACTACTGTGTAGAGACACTTC
AACATTTTTGTAACCTGTGGTGTTTGTGTG