Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0207200-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:5609827:5612733:-1 gene:Os03g0207200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Syntaxin 6, N-terminal domain containing protein. (Os03t0207200-01)
Sequence	ATGGCGACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCCGCCGCCGAGGAGGTG CAGGGATCCGCCGACCGCATGGAGTCGGTGTACAGGATATGGGTGCAGGACAGGAGTGGG GGCGATTCGGAGGCGGCGGCGGCGGCGGCTGCTGCTGCCGTGGGTGGAGGAGGGCTCCCT GCCGGCGAGCTCCGCCGCGAGCTGCACACTGCGCTCGGCACCGCCAAGTGGCAGCTAGAT GAATTGGAGCGGGCAATTAGATCAAACGACAAGGTTTTCTCAGCTGGAAAGGACACAAAA GCACGGCATGATGACTTTGTTGCGGCAATCGGTTGTCGCATACTTGAGGTTGAGAACAAT TTGAAAGAATCCAATGTTGCAGAGGGAAGGGGTGCCCTAAGCTGGATTGATTTGGATGAG GATGAACGGAATGATCTTGCTACCTTCCTATCTGCAAGCTCTTTTCAACAGCGAGACAAA GTAGTTACAATTCCATCTGTTGGTGATATTGATGTGGGCAACAATGCAGCAATGGTTAAA AAGGATATGTATGCTGACAGCTCCAAGGATTCTGGCTCCGCTGAGTTGAGTTCAGCAAGA GTAAAGGAAGAAACGCATCGTGGGCACAGAAGGGCTGCTAGTGCCCATGCTGATATCGGG TCATGGACTATGTTATGTCCAAATGAGAGCGAGAGTTCTGCTGACCTACCATATGATGAC AAGCACCAAGAACCTTTGCTGAAGATAGTGAAAACATGTGCACTGACGAGTGCCTTGCAA TCTAAGCCTAGAACGAAGAAAAAAGGTGGATCTGTGAAATGGGCCGCTGTTGATCAACAA GATGTGGAAGAGACAATCCCTCTCAGTTCTCAGATGGGTCAGGGATCGGATAGATGCTTT GAAAGAAGCAAGAGTTGTGTAAGTACTTGTGATGAGAGTACATACAATAAGAAACTTTAT GGTTGTCTTGGAGCCCTGCATAGACGACTGCAGAGGTCGCGATATCGAATTCGGTATGGG CGTCCTGTTCAATTAATTGTGTTAGCAGTTGCTGCCCTCTTAATATTCATGTGTGTATTC AAGAAAATTTGGTGA

Peptide Sequence

PEP ID	Os03t0207200-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:5609827:5612733:-1 gene:Os03g0207200 transcript:Os03t0207200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Syntaxin 6, N-terminal domain containing protein. (Os03t0207200-01)
Sequence	MATSFDRWEKDPFFPAAEEVQGSADRMESVYRIWVQDRSGGDSEAAAAAAAAAVGGGGLP AGELRRELHTALGTAKWQLDELERAIRSNDKVFSAGKDTKARHDDFVAAIGCRILEVENN LKESNVAEGRGALSWIDLDEDERNDLATFLSASSFQQRDKVVTIPSVGDIDVGNNAAMVK KDMYADSSKDSGSAELSSARVKEETHRGHRRAASAHADIGSWTMLCPNESESSADLPYDD KHQEPLLKIVKTCALTSALQSKPRTKKKGGSVKWAAVDQQDVEETIPLSSQMGQGSDRCF ERSKSCVSTCDESTYNKKLYGCLGALHRRLQRSRYRIRYGRPVQLIVLAVAALLIFMCVF KKIW

Transcript Sequence

Transcript ID	Os03t0207200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:5609827:5612733:-1 gene:Os03g0207200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Syntaxin 6, N-terminal domain containing protein. (Os03t0207200-01)
Sequence	GGCCATTTCCGACTTTCCGTTGCCCTCGTCTCCCCCTTCTCGCTCGCAATGGCGACGTCG TTCGACCGCTGGGAGAAGGACCCCTTCTTCCCCGCCGCCGAGGAGGTGCAGGGATCCGCC GACCGCATGGAGTCGGTGTACAGGATATGGGTGCAGGACAGGAGTGGGGGCGATTCGGAG GCGGCGGCGGCGGCGGCTGCTGCTGCCGTGGGTGGAGGAGGGCTCCCTGCCGGCGAGCTC CGCCGCGAGCTGCACACTGCGCTCGGCACCGCCAAGTGGCAGCTAGATGAATTGGAGCGG GCAATTAGATCAAACGACAAGGTTTTCTCAGCTGGAAAGGACACAAAAGCACGGCATGAT GACTTTGTTGCGGCAATCGGTTGTCGCATACTTGAGGTTGAGAACAATTTGAAAGAATCC AATGTTGCAGAGGGAAGGGGTGCCCTAAGCTGGATTGATTTGGATGAGGATGAACGGAAT GATCTTGCTACCTTCCTATCTGCAAGCTCTTTTCAACAGCGAGACAAAGTAGTTACAATT CCATCTGTTGGTGATATTGATGTGGGCAACAATGCAGCAATGGTTAAAAAGGATATGTAT GCTGACAGCTCCAAGGATTCTGGCTCCGCTGAGTTGAGTTCAGCAAGAGTAAAGGAAGAA ACGCATCGTGGGCACAGAAGGGCTGCTAGTGCCCATGCTGATATCGGGTCATGGACTATG TTATGTCCAAATGAGAGCGAGAGTTCTGCTGACCTACCATATGATGACAAGCACCAAGAA CCTTTGCTGAAGATAGTGAAAACATGTGCACTGACGAGTGCCTTGCAATCTAAGCCTAGA ACGAAGAAAAAAGGTGGATCTGTGAAATGGGCCGCTGTTGATCAACAAGATGTGGAAGAG ACAATCCCTCTCAGTTCTCAGATGGGTCAGGGATCGGATAGATGCTTTGAAAGAAGCAAG AGTTGTGTAAGTACTTGTGATGAGAGTACATACAATAAGAAACTTTATGGTTGTCTTGGA GCCCTGCATAGACGACTGCAGAGGTCGCGATATCGAATTCGGTATGGGCGTCCTGTTCAA TTAATTGTGTTAGCAGTTGCTGCCCTCTTAATATTCATGTGTGTATTCAAGAAAATTTGG TGACCTTTTGATGGGCTCATGATTTCCATAGAAGCCTCACCACAGCAGCTTGCGAGGTTC TACCATTTTTGCCTGCATAGCTCATATAACTGGTGTTGAACAGGCATCTGAGGCATGAAG AATGATCAGACTGGAGCAGCTTATCGCATTGACTGTACAGAAGTGTGCTGCATCAGGATG TCATCGGAAATGCAGTGTGCTGCCTGCATGATGCACCTCAAGATCTTGATCCTCACCATG GCCTGTTGACATATGCAACACCGTGTAGGGCCCGCTTTGGAAAGTTGGAAGAGTGGTGGA ATTTCCTTTGTGAAATATATCTTCTGAACCCCTCATTCATAGCTGGTTCCATGAGAATAG GTTCTGAAGTGAAATGTGTAAGATGCTAGAACAATTGCCACACAATCAGAAGCTAGCCCG GGCTATCCGGCTCTAGAATTAGAATTTTGATGCCTCTGGCATTACGTTTGTTAGGCTATT AATTAAAGGAGCTATAAGGGGTAGCTAAATGTATTGCGATGTTTGAAACTTCTGCACTGT TCGCGTGTTATATGAAAGACTAATCTTCTTGAGTG