Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0205700-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:5531021:5534319:1 gene:Os03g0205700 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB domain containing protein. (Os03t0205700-01);Photoreceptor-interacting protein-like. (Os03t0205700-02)
Sequence

ATGAAATTCATGAAGCTTGGATCGAACCCGGATACTTTTCAGGATGATGGCAATGAAGTC
AGCATTGTGGCAACTGAATTAGTGAGCGATGTCACTGTTCGCATAGGGACTACAAAGTTT
TACCTTCACAAGTTCCCACTTCTGTCCAAGTGCGCTCGCTTTCAGAAGATGATCCCAACT
ACTGGTGATGAAAACATTGAGATTCACATCCATGATATTCCTGGTGGCGCCAAGGCTTTT
GAGATCTGTGCCAAGTTTTGTTATGGTATGATTGTCACGCTCAATGCCTACAATGTCATT
GCAGCCCGCTGCGCCGCAGAGTACTTGGAGATGCATGAAACTGTCGACAAGGGTAATCTC
ATCTACAAGATTGAGGTCTTCCTCAGCTCAAGCATTTTCCGGAGTTGGAAGGACTCTATC
ATTGTTCTTGGTACTACAAAGGCTCACTTGCCTTGGTCAGAGGATCTTAAGCTGGTTAGC
CACTGCATCGACTCCATTGCTTCGAAAGCCTCCACTGACACCTCCAAGGTTGAGTGGTCA
TATTCATACAATCGCAAGAAGCTCCCAACTGAGAATGGCCTTGATTTGGAATGGAATGGA
GTCAAGAAGCAGCAGTTTGTGCCGCATGATTGGTGGGTCGAGGATCTCGCAGATCTCGAC
ATTGATTCATACAAGCAAGTCATAACAGCAATCAAGACCAAGGGTATGGTGCCCAAGGAT
GTGATTGGGGAGGCAATCAAGGCTTACACATACAAGAAGCTCCCTTCCTTAAGTAAGGTT
TCAATGGTCCATGGCGACGCAAAAGTTCGGGCCATGCTAGTTACCATCACATGCTTGTTG
CCATCAGAGAAAGGATCAGTTTCATGCAGCTTCCTCTTAAAGCTACTGAAAGCAACAAAT
TTGCTAAAATGTGGAGAGCTCTGCAGGAAAGAGCTTATGAAGCGTATTGGACGGCAACTA
GATGAAGCGTCCGTGTCGGATCTTCTGATTCCTACAGTGGATGGGGAGACCACAGTTTAT
GACATTGACATGATACTCAGTATAGTGGAAGAATTTGTCAGGCAAGACAGTAAGAATGCT
CAGAAACATAATGGTGGTGAAGTGGACAGTCATGTCCAAGCACCTAGTGCATCCATGATC
AAAGTGGCTAAAGTGGTTGATGGGTATCTTGCTGAGGTTGCAAAAGATCCAAATACACCC
ATTTTGAAGTTCATTCATCTAGCCGAGACAATGTCGATAAATTCAAGGCCAGTTCATGAT
GGGCTATACCGCGCCATCGACATGTATCTGAAGGTACTCTTGCAAATTTCAACTTCCAAT
CAAAAATGCACTACTCATAGGACATGTTCACAAGCACACTGA

Peptide Sequence

PEP ID

Os03t0205700-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:5531021:5534319:1 gene:Os03g0205700 transcript:Os03t0205700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB domain containing protein. (Os03t0205700-01);Photoreceptor-interacting protein-like. (Os03t0205700-02)
Sequence

MKFMKLGSNPDTFQDDGNEVSIVATELVSDVTVRIGTTKFYLHKFPLLSKCARFQKMIPT
TGDENIEIHIHDIPGGAKAFEICAKFCYGMIVTLNAYNVIAARCAAEYLEMHETVDKGNL
IYKIEVFLSSSIFRSWKDSIIVLGTTKAHLPWSEDLKLVSHCIDSIASKASTDTSKVEWS
YSYNRKKLPTENGLDLEWNGVKKQQFVPHDWWVEDLADLDIDSYKQVITAIKTKGMVPKD
VIGEAIKAYTYKKLPSLSKVSMVHGDAKVRAMLVTITCLLPSEKGSVSCSFLLKLLKATN
LLKCGELCRKELMKRIGRQLDEASVSDLLIPTVDGETTVYDIDMILSIVEEFVRQDSKNA
QKHNGGEVDSHVQAPSASMIKVAKVVDGYLAEVAKDPNTPILKFIHLAETMSINSRPVHD
GLYRAIDMYLKVLLQISTSNQKCTTHRTCSQAH

Transcript Sequence

Transcript ID

Os03t0205700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:5531021:5534319:1 gene:Os03g0205700 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB domain containing protein. (Os03t0205700-01);Photoreceptor-interacting protein-like. (Os03t0205700-02)
Sequence

ATTGGTTGCAGCGTTGTTGTTGTGTTAGTGGTGGTGGTGGTGGTTTGTGTGTTTGGGCGT
CGATCAGGAGAGATAAGATTTAAGATCAGCGCGTGTGCGTCTGTTCTTTGCCTGTTTCAA
GATGAAATTCATGAAGCTTGGATCGAACCCGGATACTTTTCAGGATGATGGCAATGAAGT
CAGCATTGTGGCAACTGAATTAGTGAGCGATGTCACTGTTCGCATAGGGACTACAAAGTT
TTACCTTCACAAGTTCCCACTTCTGTCCAAGTGCGCTCGCTTTCAGAAGATGATCCCAAC
TACTGGTGATGAAAACATTGAGATTCACATCCATGATATTCCTGGTGGCGCCAAGGCTTT
TGAGATCTGTGCCAAGTTTTGTTATGGTATGATTGTCACGCTCAATGCCTACAATGTCAT
TGCAGCCCGCTGCGCCGCAGAGTACTTGGAGATGCATGAAACTGTCGACAAGGGTAATCT
CATCTACAAGATTGAGGTCTTCCTCAGCTCAAGCATTTTCCGGAGTTGGAAGGACTCTAT
CATTGTTCTTGGTACTACAAAGGCTCACTTGCCTTGGTCAGAGGATCTTAAGCTGGTTAG
CCACTGCATCGACTCCATTGCTTCGAAAGCCTCCACTGACACCTCCAAGGTTGAGTGGTC
ATATTCATACAATCGCAAGAAGCTCCCAACTGAGAATGGCCTTGATTTGGAATGGAATGG
AGTCAAGAAGCAGCAGTTTGTGCCGCATGATTGGTGGGTCGAGGATCTCGCAGATCTCGA
CATTGATTCATACAAGCAAGTCATAACAGCAATCAAGACCAAGGGTATGGTGCCCAAGGA
TGTGATTGGGGAGGCAATCAAGGCTTACACATACAAGAAGCTCCCTTCCTTAAGTAAGGT
TTCAATGGTCCATGGCGACGCAAAAGTTCGGGCCATGCTAGTTACCATCACATGCTTGTT
GCCATCAGAGAAAGGATCAGTTTCATGCAGCTTCCTCTTAAAGCTACTGAAAGCAACAAA
TTTGCTAAAATGTGGAGAGCTCTGCAGGAAAGAGCTTATGAAGCGTATTGGACGGCAACT
AGATGAAGCGTCCGTGTCGGATCTTCTGATTCCTACAGTGGATGGGGAGACCACAGTTTA
TGACATTGACATGATACTCAGTATAGTGGAAGAATTTGTCAGGCAAGACAGTAAGAATGC
TCAGAAACATAATGGTGGTGAAGTGGACAGTCATGTCCAAGCACCTAGTGCATCCATGAT
CAAAGTGGCTAAAGTGGTTGATGGGTATCTTGCTGAGGTTGCAAAAGATCCAAATACACC
CATTTTGAAGTTCATTCATCTAGCCGAGACAATGTCGATAAATTCAAGGCCAGTTCATGA
TGGGCTATACCGCGCCATCGACATGTATCTGAAGGTACTCTTGCAAATTTCAACTTCCAA
TCAAAAATGCACTACTCATAGGACATGTTCACAAGCACACTGAATATCTAGCACATAGTC
CTAATGCATTTCAGCTCGTGACATTTTTGCTTCAACTCACGAATTTATTCATATGCATTG
CTCATATAAATTCTTCTGTATTTACGGTTGTACAAAATTTGTTTTTAAGTATAACATCTG
TTTATTTTTCTTAAATGAGCAGGAGCACCCAAGCTTGGGAAAGAATGAGAAGAAGAAGCT
GTGCAGCCTCATGGACTGCAAGAAACTCTCACCGGACGCGTGTGCTCACGCGGTGCAGAA
CGAGCGGCTGCCACTGAGGACCGTGGTGCAGGTGCTGTACCACGAGCAGACGAGGGCTTC
TGCGGCGGTCACCATCCGAGCCGACAGCATCTGCGTCGGCTCGTACGAGAGCTCGAGGTC
AGGCGCCACCACCAACACGGAGGACGAGTGGGACGGCGTCATGGTCGTGGAAGACCTCAG
CCTGTCCACCAAGACCACCACCAAGCTAGACGGCGCAGCCAATAGCCATTGCAGCAACGG
CAAGGCGAAGAAAGGCGGCGCGTCGACGCCGAAGAAGGCGGCTCACCGGAGGACGACGAC
GGTGCCAACCGGCAAAGGGCAGTCCGGTGAGCGCAGCAGCTCGGACTCGTCGGACAGTGC
GATCTTGCAGAAGCTGGAGCTTCCCAAGAGGACCCCCTCCAGGAGCACGAAGCCGGCTGC
TGTGTAGCGTTAGCTTCCTGCATGAATTCTCAGTGGATTCGTAAGGATCGTTAGGTTCTT
AGCTGCTGCTTCTTTTCTTTCTTTCTTCATGAATGTTGCATAGAAGCAAGAACTAATGGT
TTACACGTCTGTTGGTAGGGATGTTATAATGTGAGGTCTGCTTTTAGGTGATCTTGTTAG
TAGCATTGTAGGCTTGCCATGAAACCTATGAAAATGTTGGTTGCTACTTTGAGGTTTTAT
GCCATACTCAGAAGTTAGTAGCTGTTATGAAAAAAGTTTAGAACTTTGTTAGAACTTGGA
AGCATAATTCATCTGCTGCTAGCCTGTTTATACTGGTATAGTGGTATGATCTCAGTTC