Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0205400-00
CDS Infomation	cds chromosome:IRGSP-1.0:3:5508753:5516754:1 gene:Os03g0205400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to XPG I-region family protein, expressed. (Os03t0205400-00)
Sequence	ATGGGAGTGCACGGGCTGTGGGAGCTGCTGGCTCCCGTGGGGCGGCGCGTGTCGGTGGAG ACCCTGGCGGGGAAGCGGCTGGCGGTGGACGCGAGCATCTGGATGGTGCAGTTCATGCGG GCGATGCGGGACGACAAGGGCGACATGATCCGCGACGCCCACCTCCTCGGGTTCCTCCGC CGAATCTGCAAGCTCCTCTTCCTCCGCGCGCGCCCGGTCTTCGTCTTCGACGGCGCCACC CCGGCCCTCAAGCGGCGCACCCTCGCCGCCCGCCGCCGCCACCGCGACGCCGCCCAGGCC AAGGTCCGGAAGACCGCCGAGAAGCTCCTGCTCTCCCATCTCAAGGCTAGGAAGCTTGAA GAATTGGCAGCTCAAATCAAGAGTGACAGGGCTAAGCATGACAATAAAGGCAAGCAAGTT GAGAGCAGTAAAATGGGAGAAATTGAGAAAATTAATGGAGAGCAAAAGAAAAACAACGAT GGAGAAAACAGCGGGGGGATTGTAGCACCAATCGACCAGGAGAAACTGGATGAACTGCTG GCCGCATCACTTGCTGCAGAGGAAGAGGCAAATTTGACTGGCAAAGGAAAACAGTATACT GTAAGTGTTCCATTGCAAGAAGCAGCTGACATTAGTGAGGATGATGACGAGGATGATGGA GAGATGATCTTTCCTATGACAACAGGTGATATTGATCCTGCAGTATTAGCTTCACTCCCT CCATCAATGCAGTTGGATCTTCTTGTTCAGATGAGGGAGAGAGTGATGGCTGAAAACAGG CAGAAGTACCAGAAAATTAAAAAGGAACCTGCAAAATTCTCAGAGCTCCAAATACAGTCG TACCTGAAAACTGTTGCTTTCAGGCGAGAGATAGATGAAGTTCAGAGGGGTGCTGCAGGC AGGGGTGTTGGAGGCGTCCAAACATCAAAAATAGCATCTGAAGCTAACAGAGAGTTCATT TTCTCATCATCATTCACTGGTGATAAACAGACATTAGCACAAAGAGGCGGAAAGGAGCAT ATTGTCGATAGCATTAAATCAAAGAGGGAAATCAATCCTGCTGTCTTCAAATCCAATCCC ACTAGTAGTTCTAGCTCAATTAAGCCTAACAACAGTGAGCCTTTGGGGAGTTTTGGACCT GATGTTGAGACATATCGTGATGAGAGAGGAAGGATTAGAGTAAGTAGGGTCAAAGCAATG GGAATTCGTATGACTCGTGATATTCAAAGGAATTTGGATTTTATCAAAGAGCATGAACAG GTCAGAAACAGGGGGCATGACTCTGTAGTTGAAGGATTAGCTAACAATGAAGAGCCTCCA GATTTTCCAGAACATCTTTTTGAAGGTAATGGGCTGCGGAGTTCTCTTCATCTCAGCGAA GATTATGATGAAACTGCTAGCGATAACCATCACACATCATCACTAGTAGGATCTGACAAA ATTTCTGAGGGTGATTATCATGGAAGCAAAGAAACAATAGAGATATCCTTTGCTGACGAT CAAACAGAAGTGAAGGACAATGATGACCAAATTTTCTTGCATTTAGCTTCTGGAGCTTCA TCCAACTTATTCACTACAGAACAGACTGATGGCTCTGATTGCATTACAAAAGAAGGCGTA CTTGAAAGTGAAACACCTCCTATGCAAGTTGATGAGAAGGATCACCAAGCATCACTGATG GACAATTTCTGTACTGATGATGAGATAGAGTGGGAAGAAGGTGGTTGTGATGTTCCTGGA GGTCCTTCCAGTAATGAAAACGATCAATCTAAAGTACCGAAAGGAGATCTAGAAGAAGAT GCCCTTGTTCAGGAAGCTATAAGGAGAAGTTTAGAGGATTTTAAGAAGCAAGAACATGAA AATGTGACCCCTGAAGATTTACAGGCATCTTTTGAAGACAAACCTTTGCAATCTTATGAT GATGTTCCTAAGCCAGCTGGAGCTGCAGGAAAGACAGCTGATAAAATTGGGAAGGAAATA AATTGTGAAGAGAATGATATAGTGCATGGATCACTTGTAGTTGATGGACGAGAAAACGAG AATCAGACTCAACCCGAGAATAGTGATGGGCATGCCGATATGAAGAGAGCTTATTTGTTG GATCCTCTCCCTCCATGTAATATGACCGCCAGTACTAGTGCTGCAAAATCACCTGAGGGC TCAGAAGTTCAGCACCACAATTCAATGTTACATTCAATCAGAACTCCCGAGTGGCCTAAG AACGATAGCGATAAAGTTATGACGCAATACAGTTTGAATTCTGATAATTCAAAGTGCAAA ATAGATGATTCTTGTACTGGAGAAACCTCGAGGTCACTCCAAAATGACCTTTTGATGGAT GAACTGGTTCCTGACACTGCTGTACAAAAAGAAAATATGATCCAGAGAACTACGGACTTA TCCACATCTGAGATAAACTATACGAAACTGAACGATAATGTTGGTATATATAGTGTGTCA GCTAGTAATCTAGAAAAGGAATTATCTCTTCTGAGACAGGAACAAGAATATCTCGGAAAT GAAAGGCGGAAGCTTGAAAGCCACGCAGAGTCTGTCAGCAGTGAGATGTTTGCTGAATGC CAGGAATTGCTTCAAATGTTTGGCTTGCCATATATAATTGCACCTATGGAAGCTGAAGCT CAGTGTGCATACATGGAAATGACTAACCTTGTCGATGGAGTTGTTACTGATGATTCAGAT GTTTTCCTGTTTGGTGCAAGGAATGTTTATAAGAACATATTTGACGATAGGAAATATGTT GAAACATACTTAATGAAGGACATTGAGTCTGAGCTTGGTCTAACAAGAGAACAATTAATA CGTATGGCAATGCTTCTTGGGAGTGACTACACTGAAGGAATTAGTGGCATTGGCATTGTG AATGCTATTGAAGTTGCACACGCATTTCCTGAGGAAGATGGGCTCCAAAAGTTCAGGGAG TGGGTTGAATCACCAGATCCAACTTTACTGGGAAAACTTGGTATGGAAAGTGGTAGCAGC TCAAAGAAAAAAAAGTCTGGCAGAAATCATTCAGACGGAAAGGGAAACAGCCTTGAGCCT GAATACGCTAAAGGTTCTGATGACAGCCAATCTTCTAATGAGACCCAACGCATCAAGGAA ATATTTATGAGTAAGCATAGGAATGTGAGCAAGAACTGGCATATTCCTTCTACTTTTCCT AGTGAAGCAGTCATAAACGCATATATTTCCCCACAAGTTGATGATTCAACAGAACCATTT TCCTGGGGAAGACCAGATTCAGGCTTACTGCGCAAGTTATGTTGGGAAAGGTTTGGGTGG AGCAAGGAAAAGGCTGATGAACTGCTAATTCCTGTTTTGAGAGAGTATAATAAGCACGAG ACTCAACTACGCATGGAGGCGTTTTACTCATTCAATGAGAGATTTGCAAAAATTCGTAGC AAAAGGATTAAGAAAGCTATCAAGGGTATTACAGGGAAAAGCTTTCTAGAGACAGATGAA CTTGATCATGATAGTCCCAGTACTAGTAATACCAGCAAGAAGAAAGAGAGAACCTCCTCT GGTCGTGGTAGGGCTAAAGGGCAAAGAACCAAAGATGTTGGGCCTGGTAACACAGGAAAT CAGGACTATGACATTGCTGATAGCTTAGTAGATGCAGGTGAACATACTACAGAAAAAAGC ACGTCCAGTAAGAAAAGAACTGCAAACTCCTCTGGTGGTTCAAGAGGCAAAGGAAGAAGA AGCATGAATGCTGCACATGTGATAATTGGAAATGGGGAAGATTCTGATGTCTCTAATTTA GCATCTGATGAGGATTCCCATATTAGACATACCAACGACTATGAATCAGAGGGATTGACA TTACGCAGGGTAAAGTAA

Peptide Sequence

PEP ID	Os03t0205400-00
PEP Infomation	pep chromosome:IRGSP-1.0:3:5508753:5516754:1 gene:Os03g0205400 transcript:Os03t0205400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to XPG I-region family protein, expressed. (Os03t0205400-00)
Sequence	MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR RICKLLFLRARPVFVFDGATPALKRRTLAARRRHRDAAQAKVRKTAEKLLLSHLKARKLE ELAAQIKSDRAKHDNKGKQVESSKMGEIEKINGEQKKNNDGENSGGIVAPIDQEKLDELL AASLAAEEEANLTGKGKQYTVSVPLQEAADISEDDDEDDGEMIFPMTTGDIDPAVLASLP PSMQLDLLVQMRERVMAENRQKYQKIKKEPAKFSELQIQSYLKTVAFRREIDEVQRGAAG RGVGGVQTSKIASEANREFIFSSSFTGDKQTLAQRGGKEHIVDSIKSKREINPAVFKSNP TSSSSSIKPNNSEPLGSFGPDVETYRDERGRIRVSRVKAMGIRMTRDIQRNLDFIKEHEQ VRNRGHDSVVEGLANNEEPPDFPEHLFEGNGLRSSLHLSEDYDETASDNHHTSSLVGSDK ISEGDYHGSKETIEISFADDQTEVKDNDDQIFLHLASGASSNLFTTEQTDGSDCITKEGV LESETPPMQVDEKDHQASLMDNFCTDDEIEWEEGGCDVPGGPSSNENDQSKVPKGDLEED ALVQEAIRRSLEDFKKQEHENVTPEDLQASFEDKPLQSYDDVPKPAGAAGKTADKIGKEI NCEENDIVHGSLVVDGRENENQTQPENSDGHADMKRAYLLDPLPPCNMTASTSAAKSPEG SEVQHHNSMLHSIRTPEWPKNDSDKVMTQYSLNSDNSKCKIDDSCTGETSRSLQNDLLMD ELVPDTAVQKENMIQRTTDLSTSEINYTKLNDNVGIYSVSASNLEKELSLLRQEQEYLGN ERRKLESHAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSD VFLFGARNVYKNIFDDRKYVETYLMKDIESELGLTREQLIRMAMLLGSDYTEGISGIGIV NAIEVAHAFPEEDGLQKFREWVESPDPTLLGKLGMESGSSSKKKKSGRNHSDGKGNSLEP EYAKGSDDSQSSNETQRIKEIFMSKHRNVSKNWHIPSTFPSEAVINAYISPQVDDSTEPF SWGRPDSGLLRKLCWERFGWSKEKADELLIPVLREYNKHETQLRMEAFYSFNERFAKIRS KRIKKAIKGITGKSFLETDELDHDSPSTSNTSKKKERTSSGRGRAKGQRTKDVGPGNTGN QDYDIADSLVDAGEHTTEKSTSSKKRTANSSGGSRGKGRRSMNAAHVIIGNGEDSDVSNL ASDEDSHIRHTNDYESEGLTLRRVK

Transcript Sequence

Transcript ID	Os03t0205400-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:5508753:5516754:1 gene:Os03g0205400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to XPG I-region family protein, expressed. (Os03t0205400-00)
Sequence	GCGGTCGCCGGAAGCCGTCCCAGCGGCGGCGGGGGGGAGATGGGAGTGCACGGGCTGTGG GAGCTGCTGGCTCCCGTGGGGCGGCGCGTGTCGGTGGAGACCCTGGCGGGGAAGCGGCTG GCGGTGGACGCGAGCATCTGGATGGTGCAGTTCATGCGGGCGATGCGGGACGACAAGGGC GACATGATCCGCGACGCCCACCTCCTCGGGTTCCTCCGCCGAATCTGCAAGCTCCTCTTC CTCCGCGCGCGCCCGGTCTTCGTCTTCGACGGCGCCACCCCGGCCCTCAAGCGGCGCACC CTCGCCGCCCGCCGCCGCCACCGCGACGCCGCCCAGGCCAAGGTCCGGAAGACCGCCGAG AAGCTCCTGCTCTCCCATCTCAAGGCTAGGAAGCTTGAAGAATTGGCAGCTCAAATCAAG AGTGACAGGGCTAAGCATGACAATAAAGGCAAGCAAGTTGAGAGCAGTAAAATGGGAGAA ATTGAGAAAATTAATGGAGAGCAAAAGAAAAACAACGATGGAGAAAACAGCGGGGGGATT GTAGCACCAATCGACCAGGAGAAACTGGATGAACTGCTGGCCGCATCACTTGCTGCAGAG GAAGAGGCAAATTTGACTGGCAAAGGAAAACAGTATACTGTAAGTGTTCCATTGCAAGAA GCAGCTGACATTAGTGAGGATGATGACGAGGATGATGGAGAGATGATCTTTCCTATGACA ACAGGTGATATTGATCCTGCAGTATTAGCTTCACTCCCTCCATCAATGCAGTTGGATCTT CTTGTTCAGATGAGGGAGAGAGTGATGGCTGAAAACAGGCAGAAGTACCAGAAAATTAAA AAGGAACCTGCAAAATTCTCAGAGCTCCAAATACAGTCGTACCTGAAAACTGTTGCTTTC AGGCGAGAGATAGATGAAGTTCAGAGGGGTGCTGCAGGCAGGGGTGTTGGAGGCGTCCAA ACATCAAAAATAGCATCTGAAGCTAACAGAGAGTTCATTTTCTCATCATCATTCACTGGT GATAAACAGACATTAGCACAAAGAGGCGGAAAGGAGCATATTGTCGATAGCATTAAATCA AAGAGGGAAATCAATCCTGCTGTCTTCAAATCCAATCCCACTAGTAGTTCTAGCTCAATT AAGCCTAACAACAGTGAGCCTTTGGGGAGTTTTGGACCTGATGTTGAGACATATCGTGAT GAGAGAGGAAGGATTAGAGTAAGTAGGGTCAAAGCAATGGGAATTCGTATGACTCGTGAT ATTCAAAGGAATTTGGATTTTATCAAAGAGCATGAACAGGTCAGAAACAGGGGGCATGAC TCTGTAGTTGAAGGATTAGCTAACAATGAAGAGCCTCCAGATTTTCCAGAACATCTTTTT GAAGGTAATGGGCTGCGGAGTTCTCTTCATCTCAGCGAAGATTATGATGAAACTGCTAGC GATAACCATCACACATCATCACTAGTAGGATCTGACAAAATTTCTGAGGGTGATTATCAT GGAAGCAAAGAAACAATAGAGATATCCTTTGCTGACGATCAAACAGAAGTGAAGGACAAT GATGACCAAATTTTCTTGCATTTAGCTTCTGGAGCTTCATCCAACTTATTCACTACAGAA CAGACTGATGGCTCTGATTGCATTACAAAAGAAGGCGTACTTGAAAGTGAAACACCTCCT ATGCAAGTTGATGAGAAGGATCACCAAGCATCACTGATGGACAATTTCTGTACTGATGAT GAGATAGAGTGGGAAGAAGGTGGTTGTGATGTTCCTGGAGGTCCTTCCAGTAATGAAAAC GATCAATCTAAAGTACCGAAAGGAGATCTAGAAGAAGATGCCCTTGTTCAGGAAGCTATA AGGAGAAGTTTAGAGGATTTTAAGAAGCAAGAACATGAAAATGTGACCCCTGAAGATTTA CAGGCATCTTTTGAAGACAAACCTTTGCAATCTTATGATGATGTTCCTAAGCCAGCTGGA GCTGCAGGAAAGACAGCTGATAAAATTGGGAAGGAAATAAATTGTGAAGAGAATGATATA GTGCATGGATCACTTGTAGTTGATGGACGAGAAAACGAGAATCAGACTCAACCCGAGAAT AGTGATGGGCATGCCGATATGAAGAGAGCTTATTTGTTGGATCCTCTCCCTCCATGTAAT ATGACCGCCAGTACTAGTGCTGCAAAATCACCTGAGGGCTCAGAAGTTCAGCACCACAAT TCAATGTTACATTCAATCAGAACTCCCGAGTGGCCTAAGAACGATAGCGATAAAGTTATG ACGCAATACAGTTTGAATTCTGATAATTCAAAGTGCAAAATAGATGATTCTTGTACTGGA GAAACCTCGAGGTCACTCCAAAATGACCTTTTGATGGATGAACTGGTTCCTGACACTGCT GTACAAAAAGAAAATATGATCCAGAGAACTACGGACTTATCCACATCTGAGATAAACTAT ACGAAACTGAACGATAATGTTGGTATATATAGTGTGTCAGCTAGTAATCTAGAAAAGGAA TTATCTCTTCTGAGACAGGAACAAGAATATCTCGGAAATGAAAGGCGGAAGCTTGAAAGC CACGCAGAGTCTGTCAGCAGTGAGATGTTTGCTGAATGCCAGGAATTGCTTCAAATGTTT GGCTTGCCATATATAATTGCACCTATGGAAGCTGAAGCTCAGTGTGCATACATGGAAATG ACTAACCTTGTCGATGGAGTTGTTACTGATGATTCAGATGTTTTCCTGTTTGGTGCAAGG AATGTTTATAAGAACATATTTGACGATAGGAAATATGTTGAAACATACTTAATGAAGGAC ATTGAGTCTGAGCTTGGTCTAACAAGAGAACAATTAATACGTATGGCAATGCTTCTTGGG AGTGACTACACTGAAGGAATTAGTGGCATTGGCATTGTGAATGCTATTGAAGTTGCACAC GCATTTCCTGAGGAAGATGGGCTCCAAAAGTTCAGGGAGTGGGTTGAATCACCAGATCCA ACTTTACTGGGAAAACTTGGTATGGAAAGTGGTAGCAGCTCAAAGAAAAAAAAGTCTGGC AGAAATCATTCAGACGGAAAGGGAAACAGCCTTGAGCCTGAATACGCTAAAGGTTCTGAT GACAGCCAATCTTCTAATGAGACCCAACGCATCAAGGAAATATTTATGAGTAAGCATAGG AATGTGAGCAAGAACTGGCATATTCCTTCTACTTTTCCTAGTGAAGCAGTCATAAACGCA TATATTTCCCCACAAGTTGATGATTCAACAGAACCATTTTCCTGGGGAAGACCAGATTCA GGCTTACTGCGCAAGTTATGTTGGGAAAGGTTTGGGTGGAGCAAGGAAAAGGCTGATGAA CTGCTAATTCCTGTTTTGAGAGAGTATAATAAGCACGAGACTCAACTACGCATGGAGGCG TTTTACTCATTCAATGAGAGATTTGCAAAAATTCGTAGCAAAAGGATTAAGAAAGCTATC AAGGGTATTACAGGGAAAAGCTTTCTAGAGACAGATGAACTTGATCATGATAGTCCCAGT ACTAGTAATACCAGCAAGAAGAAAGAGAGAACCTCCTCTGGTCGTGGTAGGGCTAAAGGG CAAAGAACCAAAGATGTTGGGCCTGGTAACACAGGAAATCAGGACTATGACATTGCTGAT AGCTTAGTAGATGCAGGTGAACATACTACAGAAAAAAGCACGTCCAGTAAGAAAAGAACT GCAAACTCCTCTGGTGGTTCAAGAGGCAAAGGAAGAAGAAGCATGAATGCTGCACATGTG ATAATTGGAAATGGGGAAGATTCTGATGTCTCTAATTTAGCATCTGATGAGGATTCCCAT ATTAGACATACCAACGACTATGAATCAGAGGGATTGACATTACGCAGGGTAAAGTAACAT TATTATTTTTTTCATGCTGATGTTGTTTCTGCAGTCAAATAGGAAGCGTAAGCAGGTCAC ATACGCGGAAGATGGTCAGGAAGCTGATGATAATGATGTTTCCATACATCAAATCGATGA AAATCAGGGCCAAGGTTCTTTGGAGGAGGACATGTGTCACATGGCTGGACTTGACACACA ATCTAATCTGCTCCATCAGGATACGAGTGAATTAAACATCGATCAAACGCATACAGATCC CTCTGATATGAACGAAGATCCTTCGGGCTTTGAGTTACCCGAGGATTGCCATACGGACAC TGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGACGAGCA AGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCCTGTGA GGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCGACTGG AGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGACGCAA TGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCATGACT CATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGGTCACG TTTCGATTTGTTCGGCAGCC