Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0201400-02
CDS Infomation	cds chromosome:IRGSP-1.0:3:5304947:5314273:1 gene:Os03g0201400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0201400-01);Pentatricopeptide repeat domain containing protein. (Os03t0201400-02)
Sequence	ATGGACACCCCGCCGTCCGCCGCCGCCGCCACCGCCACCGCCGTTGCGTCAGACTCTGAT TGCGACTCCGCGCTCGTCGCCGACGTGGCGGAAGCGCTCGTGTCGGCGTCCCGCCTGCCG GAGCCGCCGCCTATCCCCGCCCTCCTCGCCCTCTACCTCCCGCGCCTCGCCGCCTCCCAC CACCCGCGCGTGCTCTCCCTCGCCGCCTCCCACCCGGGGCTCGCCTCGCCGGACCTGCTC CTCGCCTACCGCCGCCACCTCTCGCCGCCCTCCTGCCTCCCCTCCCTCGTCCCGCTCCTC CCCGTCCTCCCCTACCGCCACCTCCTCCCGCTCCTCCTCTCCTTCGTCCCGCTCGACCCG CTTCGCCACCTCCACCGCCACCTCCTCGCGCACCTCCCCACGAGTCCCCTCGCCGATGCC GCGCTCTCCGCCTACGCCCGCCTCCGCCTCCCCCACCTCGCCGCCCAGCTCCTCCACTCC CTCCGCCGCCGCCGTGGCGTTCGCCCTTCCCTCCAGGCTGCCAACGCCGTCCTCTCCGCG CTTTCGCGCAGCCCATCCACCTTGCCGCAGGCCTCCCTCGATGTCTTCCGCTCCCTCATC GAGCTCCGCCTCCACCCCAACCACTACACCTTCAACCTCCTCGTCCACACGCATTGCTCC AAGGGCACCCTCGCCGACGCTCTCGCCACGCTCTCCACCATGCAGGGGTTCGGCCTCTCC CCCGATGCCGTCACCTACAACACGCTCCTCAATGCGCACTGCCGGAAGGGCATGCTCGGC GAGGCCCGGGCACTGCTGGCGAGGATGAAGAGGGACGGCATCGCGCCCACGCAGCCAACG TACAATACCCTCGTGTCGGCGTTTGCTAGGCTTGGGTGGATTAAGCAGGCGACCAAGGTC GTGGAGTCCATGACAGCCTACGGGTTCGAGCCTGACCTGAGGACGTACAATGTGCTCGCC GTGGGGCTGTGCCAGGCGGGGAAGGTGGACGAGGCATTCCGGCTGAAGGATGAGATGGAA CGGCTCAGCACCGCGTTGCCGGATGTAGTGACTTACAATACACTTGTTGACGCCTGCTTC AAGTGGCGGTGCTCATCAGATGCATTGAGGCTGCTTGAGGAAATGCGTGACAAGGGGGTG AAGCCGACTTTGGTCACACATAACATTGTTGTGAAGAGTCTTTGCAAGGAGGGTAAATTG GAGGAGGCATTGGGGAAGCTGGAGAAGATAGCAGAGGAGGGGTTGGCACCAGATGTAATC ACGTACAATACGTTGATTGATGCATACTGTAAGGCTGGTAATGTCGCAAAAGCATTCACA TTGATGGATGAGATGGTCGGAAAGGGGCTCAAAATGGACACCTTCACACTTAACACCGTG CTGTACAACCTATGCAAGATGAAGCGTTATGAAGATGCTGAGGAGCTTTTGCATTCACCC CCGCAGCGGGGTTTCGTGCCTGATGAAGTCAGCTATGGTACTGTAATGGCTGCGTACTTC AAGGAGTATAATCCGGAGCCTGCTTTGCGTCTGTGGGACCAGATGATTGAGAGGAAGTTG ATACCAAGCATTTCAACGTACAACACGTTGATCAAGGGGCTTTGTAGGATGGAGAGGCTG AAAGAAGCAATTGACAAATTAAATGAGCTCGTGGAGAAGGGGTTGGTTCCTGATGAAACC ACATATAATATCATCATTCATGCATACTGCAAGGAAGGGGACCTAGAAAATGCCTTTCGA TTCCACAACAAGATGGTTGAGAATTCCTTCAAGCCAGATGTTGTTACCTGCAACACTTTG ATGAATGGCCTTTGTCTGCATGGGAAGCTAGATAAAGCATTGAAACTCTTTGAATCATGG GTGGAGAAGGGGAAGAAGGTTGATGTTATCACATATAATACCCTAATTCAATCGATGTGC AAAGTTGGGGATGTTGATACTGCTTTGCACTTCTTTGATGACATGGAGGTCAAGGGATTG CAGCCTGATGCATTTACTTATAATGTTGTGTTATCTGCACTATCTGAAGCAGGAAGATCA GAAGAAGCACATAATATGCTACATAAGTTAGCCGATAGTGGAAAATTATCTCAAAGCTTT GCTTGTCCTCTGTTGAAGCCTTCTTCTGCGGATGAAGCAGATGTCAAGGAACATGAGGGT AAACCTGAGGCAGAATCCAGTGAAAAAGCACAAGACAATGCTCTGGAGACATACATGGAA CGCCTAAATGGGCTATGTACCGGTGGGCAATTGAAAGAAGCTAAAGCCGTTTTGGATGAG ATGATGCAAAAGGGGATGCCTGTTGACAGTTCAACATATATAACTTTGATGGAAGGGCTT ATCAAGAGACAGAAAAGGCAAACCCATGCAGCTGGACAGTCCACACTATAG

Peptide Sequence

PEP ID	Os03t0201400-02
PEP Infomation	pep chromosome:IRGSP-1.0:3:5304947:5314273:1 gene:Os03g0201400 transcript:Os03t0201400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0201400-01);Pentatricopeptide repeat domain containing protein. (Os03t0201400-02)
Sequence	MDTPPSAAAATATAVASDSDCDSALVADVAEALVSASRLPEPPPIPALLALYLPRLAASH HPRVLSLAASHPGLASPDLLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDP LRHLHRHLLAHLPTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSA LSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLS PDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKV VESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACF KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVI TYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSP PQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERL KEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTL MNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGL QPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEG KPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGL IKRQKRQTHAAGQSTL

Transcript Sequence

Transcript ID	Os03t0201400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:5304947:5314273:1 gene:Os03g0201400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0201400-01);Pentatricopeptide repeat domain containing protein. (Os03t0201400-02)
Sequence	GCCGTCACACCGCCGCCGCCTCCTCGCCATGGACACCCCGCCGTCCGCCGCCGCCGCCAC CGCCACCGCCGTTGCGTCAGACTCTGATTGCGACTCCGCGCTCGTCGCCGACGTGGCGGA AGCGCTCGTGTCGGCGTCCCGCCTGCCGGAGCCGCCGCCTATCCCCGCCCTCCTCGCCCT CTACCTCCCGCGCCTCGCCGCCTCCCACCACCCGCGCGTGCTCTCCCTCGCCGCCTCCCA CCCGGGGCTCGCCTCGCCGGACCTGCTCCTCGCCTACCGCCGCCACCTCTCGCCGCCCTC CTGCCTCCCCTCCCTCGTCCCGCTCCTCCCCGTCCTCCCCTACCGCCACCTCCTCCCGCT CCTCCTCTCCTTCGTCCCGCTCGACCCGCTTCGCCACCTCCACCGCCACCTCCTCGCGCA CCTCCCCACGAGTCCCCTCGCCGATGCCGCGCTCTCCGCCTACGCCCGCCTCCGCCTCCC CCACCTCGCCGCCCAGCTCCTCCACTCCCTCCGCCGCCGCCGTGGCGTTCGCCCTTCCCT CCAGGCTGCCAACGCCGTCCTCTCCGCGCTTTCGCGCAGCCCATCCACCTTGCCGCAGGC CTCCCTCGATGTCTTCCGCTCCCTCATCGAGCTCCGCCTCCACCCCAACCACTACACCTT CAACCTCCTCGTCCACACGCATTGCTCCAAGGGCACCCTCGCCGACGCTCTCGCCACGCT CTCCACCATGCAGGGGTTCGGCCTCTCCCCCGATGCCGTCACCTACAACACGCTCCTCAA TGCGCACTGCCGGAAGGGCATGCTCGGCGAGGCCCGGGCACTGCTGGCGAGGATGAAGAG GGACGGCATCGCGCCCACGCAGCCAACGTACAATACCCTCGTGTCGGCGTTTGCTAGGCT TGGGTGGATTAAGCAGGCGACCAAGGTCGTGGAGTCCATGACAGCCTACGGGTTCGAGCC TGACCTGAGGACGTACAATGTGCTCGCCGTGGGGCTGTGCCAGGCGGGGAAGGTGGACGA GGCATTCCGGCTGAAGGATGAGATGGAACGGCTCAGCACCGCGTTGCCGGATGTAGTGAC TTACAATACACTTGTTGACGCCTGCTTCAAGTGGCGGTGCTCATCAGATGCATTGAGGCT GCTTGAGGAAATGCGTGACAAGGGGGTGAAGCCGACTTTGGTCACACATAACATTGTTGT GAAGAGTCTTTGCAAGGAGGGTAAATTGGAGGAGGCATTGGGGAAGCTGGAGAAGATAGC AGAGGAGGGGTTGGCACCAGATGTAATCACGTACAATACGTTGATTGATGCATACTGTAA GGCTGGTAATGTCGCAAAAGCATTCACATTGATGGATGAGATGGTCGGAAAGGGGCTCAA AATGGACACCTTCACACTTAACACCGTGCTGTACAACCTATGCAAGATGAAGCGTTATGA AGATGCTGAGGAGCTTTTGCATTCACCCCCGCAGCGGGGTTTCGTGCCTGATGAAGTCAG CTATGGTACTGTAATGGCTGCGTACTTCAAGGAGTATAATCCGGAGCCTGCTTTGCGTCT GTGGGACCAGATGATTGAGAGGAAGTTGATACCAAGCATTTCAACGTACAACACGTTGAT CAAGGGGCTTTGTAGGATGGAGAGGCTGAAAGAAGCAATTGACAAATTAAATGAGCTCGT GGAGAAGGGGTTGGTTCCTGATGAAACCACATATAATATCATCATTCATGCATACTGCAA GGAAGGGGACCTAGAAAATGCCTTTCGATTCCACAACAAGATGGTTGAGAATTCCTTCAA GCCAGATGTTGTTACCTGCAACACTTTGATGAATGGCCTTTGTCTGCATGGGAAGCTAGA TAAAGCATTGAAACTCTTTGAATCATGGGTGGAGAAGGGGAAGAAGGTTGATGTTATCAC ATATAATACCCTAATTCAATCGATGTGCAAAGTTGGGGATGTTGATACTGCTTTGCACTT CTTTGATGACATGGAGGTCAAGGGATTGCAGCCTGATGCATTTACTTATAATGTTGTGTT ATCTGCACTATCTGAAGCAGGAAGATCAGAAGAAGCACATAATATGCTACATAAGTTAGC CGATAGTGGAAAATTATCTCAAAGCTTTGCTTGTCCTCTGTTGAAGCCTTCTTCTGCGGA TGAAGCAGATGTCAAGGAACATGAGGGTAAACCTGAGGCAGAATCCAGTGAAAAAGCACA AGACAATGCTCTGGAGACATACATGGAACGCCTAAATGGGCTATGTACCGGTGGGCAATT GAAAGAAGCTAAAGCCGTTTTGGATGAGATGATGCAAAAGGGGATGCCTGTTGACAGTTC AACATATATAACTTTGATGGAAGGGCTTATCAAGAGACAGAAAAGGCAAACCCATGCAGC TGGACAGTCCACACTATAGATTTTTGCTCCCGTGGGATGCGGGCATGTGACATCATTAGG GCTTTAGTCATAAATCTGGAAAACTCAAGTGCTTGGCTACCAGGATTACCATCATGGACA AAAAAAAAAGAAGTCGGTATGTCAACATTTTTTTTCTGCAGTCAGAACCTTATATTTGTA ACTTTCAGTACAAAGTAAATTCATTTTTAGTTTTTTCACTGCACGCTATGTTAAATGTAT AAAGAATACCAGCAGTGATTTGAATCTTTTTTTGCTCCTGGTAAAATAGTGTAGCTTCTA GATTCCCTCCAACATAAAATTGTTGAGCTTCTACAGAAAAATATATAATCATGTGCGAGT TCTTGATCATAACCTATTAAATCCTAACCACCCATCCATCTTCAACAGATAAGAATTGAA AATTGTCGATGACTATACTTAGTAAAACAAAGTATCTTCTGTGATATTGTAAAATACATC TTGACAATACGGTCCATGTTCAACCAATATATATGTCTTAATCAACCTTGTAAACCATAA TTCCGTGCAATCAGGCATTTACTCTTGGACCTTCTCTGCTTGAAGTTTTCATAGCTGTCA CATATGCTTGTGTGATTCCATCAGCATGGTTGAGACTTCTGTTAGTTTTCATGAAGTATG TACTGGGTAGTTGGACATTCGGGCAATGATAAGTTTACTCATTATACAATGACATCCAAC AGACTATAGTTTCTTTTGCAGTTGAAAAAAAAAAGATAGTTACTTGCATCTATTGGCTAT TGATGAAGTGATGAACCACAGATTCTTATTTGTGGTACAGTGTGATTTTTTTTTGTTCTT GTTTGTGAGGAAAAAAACTGTTGTAGAATGATGTGCGTTTTTGCTGTTCAATCGTGTTTA TTTGAAATATGTTTAAACTTTTTTTATATTCATTTCCTACTAGTGATGCCTTGCCTGAAT TCAGAATAATATGTTTCGACAATGGGTGTCTATACACACACATATGAAGTATGCCTTGAG AAATGTTAAAAGTTATGTAAATGAATTGTTTTAAAGTTGTCCAGACCATAATTTGTCATT GTACTTAAATATATTTGGATTGTATGTTCTTTTAGTCAGTGGCGGAGCCAGGACCCAGCA ACCTGGGCAGGTGCCTGGGCTCCGTCCAACGCATGCATGACTAGTAACCTAATTACCATG CATGCTTAGCTAGTCATTGTCCCAGCCATGTGTAGCAGTAGTATTATTTAATTACCATGC TTAACAAAATAGCAAAACAAGTGCTTGAGGATTGTCAATTTTACTTGCGTCATTTTGTAT GGATTTATTTGTACTAGTTATTCATCAATTTTTGTTAGCCTTGCCTCATTGCCCAGGCTG AAGATAATTTCTAGATCCACCACCGCTTTTAGTAATTTTCTTCTATATTTAGGTTTATAC TCTACTGTTCTTCTGACTGTGTTAAGCCTGGTATTTCTAAGGCTCATCTCTCAACTAGCC ACCTTGATGATCCTAGAGAAGTTGCCAGGACACTGCACTTCCCGATATTGTTCACCCAGA ACCATCTCAGGGCTTTATTCTTTCAGAACCATATCAAGATCTTAGTCATTCAGAACCATC TTAGGATCTTATTCATACGGAAACATCTCAGTGACTTGTTAATTCAGAACCATCTGAACA TAACCTCGAAGTTCAATTGTTGCTGCCTCTGGAGCTCCTGGACGTGTTGTGCAAGCATTC ATAATGTAACAGGAGAGCCCTGGAGCTCAGGTCGTAGAACGTTTGGAACACTGTAACATG GAATGAAGAAGCTATGATGTTTTAGAAAACATATGAGAAGAGCTGGGATGGTGGAGCAGC CTCCACAGATCCGTTCTGTCAGGCATCTTGGCTTACGGGTGAACTACACAGCGATGGTCC ACATGTTGCCCCGCCAGATAGAGCAGATCCTGAAGAGTTTCCCACGTTTAAAATCACTGA AAATCCTGGTAATACCAATGAACAGCCAATCTTATCCAAATCCAATCAATTGTTGCATAA TTCTGAATTTGCTGCTTATTAATTGCTTTGCACTGATATGTCTGAATTCTGATTTTTCTG GTTGAGTCGTGGTCTGAATTCTGAATTCGCTGTCAATTCCTCTGCACAAAAGTGTGTGCA TTTTGATTTTCTGACTGAGTTGTGGTCTGAATTCTGAATTTGCTGCTAATTAGTGATACT TCTGGATTCTGATTATTCTGATTGAGTTGTGGTCTGAATTCTAAATTTGCTGTCAATTGC TCTGCACTAATTTGTACTATGCATTTTGATTTTCTGATTGAGTTGTGTTGTGCCCTATTT CAGAGATGCGATGACGTTACAGATCCGTTCTGTCAGGCATCTTGGCTTACGGGTGAACTA CACAGCGATGGCATCAATTTGCAGTTGACGTGAACAATCGGATAAATATGGATTGGCTAT TTACTATTGGGCAAGAAGTGTTTGGTGCTTTGCATCCAACAGCCATATGAGGCTCAGTCT CTTGGAGGCTAGCATTATCCAATCTGCTGCTTTGACTGCATGGCGTGCTTTATACGACAA CTGCAGGTGAACGCGATTCGACTTGTACCCCTGATTTTGTCTGGCATCTTGTTCCACCAG ATCGGCTGCAATGCCTCCCGTCAAGGAGTTGAGGAAGAGCCACAGCAACACCCCCTAAGC CGGTTGCCCTGATTGTGTCCCGTCCCTGCAAAGTGCTGGGTACCCATTTTGCTGCTTCTT TTAGAAGAAAATCGTTGTTTGGTTTATAGTGTGTCCCCTTTGTTCCCCTTTATTTCTTAT TGATGAATGGAACTCATTGGATTTAGTTTGGATGCAACTGCTTGTCGATAATGAGGTAGC AAACTCTCCTGCATCAATACATTGGCTCTCTATGTGGACCTAATGAGGTAGCAAACTCTC CTGCATCAATACATTGGCTCTCTATGTGGACCGTGCATTTGTTTTACTTAGTACTTACGA GATATATGTTGTTTTCTTTTTTAAGTTGATCTTCCCATTCTATTACAGTAAAGTCCAAGT TCTTAATTTCAAATGAGATGTGACCTTCTGCTCTGTTTTATGGTTGCATGTATTTCAACT TTGTACCAATGCATGCTACTAAATTTTTATGCTTTTTCTAGCAGAATAAAATCCTATAAA CTGGTAAATAATTTATGGGCTTCTTCTGCATTATAATGGAATGCCTAGGCTGTAAGGAAA TTAAGCACTTTCCAGTATTTAGGCACACATATACGGATTTTTAGATTAATATATCAATCT TCCGTGTATCTCTTATTTATTAACTTCTGCACATCTCTACCCAAAGATATATCATATATC TCATACATTGACTAATGTGATCATTGGTGTGTAATGTGATCATTTTTGTCTACTTAAAGG AAGTCCAGGTTCATTATTCCAAATTCATTCTAGAACTACAGACCAATGTTTCTGAAAGTA GTTTCAAATTTAAGCTTCTTAATGGCCCCTAGGGTGATGGAGGTCACGGCTGAGGCACTC GCTCGGGAGGAGGTTTGCTGGTTATATTGAGTGATGATCCTGGACTCTGCTGCCGAGGTC GCTGCAATGATTGGCTCTACCGCTGAGGCCAAGAGGCATCCACTCTGCCGCCCAGGCCGC TACACTGCCCCTGTATGATGGGCTGCGTTGCCTTGCTGACGACCACAATGTTCCCATTCT CTTATTTATGAATCACCACCCTCAAGGCCATTCTTCCACCCCCCCCCAGACCACAGATTG ATAGCACCACCATTACTATGCTGAGACTGTGAGCATGCACAGCTCTGAAGCCTTTTGTAT GACAAGGATCAGGAGTTCAGGATGCAAGTCCACCATATGGATTGAATTTGGTGGCCGTGT AATTTCTGTGTCCTGCAAAGGACGTTGCTGGTTTCTTTACGGCTGCTATGTTGCTACCTT TTCAGAGAAGGTATTGCAATCTATATTCGCAAGGCTTTATCAGTTCATAGGCGGTGCTAT TGCGTCTCTTATTTCTCTACCATGAGTGAATAGAGGATATGGCTACTGTTGATTGGAAAT AGAAGATGAAGCTTTGAAGATCTGTTCTCTATGAACAGCTAAAATTCTGTAAACAGTGCT TGTGGTGCATCATTCTAAAAAGAAAGGAAACGAATGTTTTTGTAACTTGCAAGAATCAAA CTGGAGAAGGAAAAACAGAAGAAAGATGGAACAACTGCAAATCTGTGCACTACTACGACT ATATATGGATTTGTTGTGTTTTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATT TATCGACTGTTTGTATAAGAAATCAATAATACATGTGCATGTATTAGTTGTGTTTTAGCG TTTCAGATCTCAGCGGGATGAGTTGTTAACAGCCATCTTGTTTATTCTGAAATTGAAAGG AAAAGAAATTTC