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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0188200-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:4616778:4618026:-1 gene:Os03g0188200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0188200-01)
Sequence

ATGGCTCACCGCCGGATCGCGCTCGCCGTCCTCGTGACGCTGCTCTTGTCGGCGTTCCGC
CCTTGCCTGGCGCAACAGAGCAACGACGACACGAGCAAACACCACCGGAGCGCCACGGCC
GGCGGGTTCACGCCGACCACCGTCGTCGTGCTCGTGGCTCTCATCACCGCCTTCGTCCTC
CTCACCGTGTTCTCCGTCCTCATCAACCGCTGCGCCCAGGCGCGCGCTCCCCCGCGCCGG
GCGTTCCGCAGCACGGCGTCCCATCAGCCCGTCGGCGGCGCCGCCGCCGCGTCCCGCGCC
TCGCGTGGCCTCGACAAGGAGGTCGTGGAGGCGTTCCCCACGGCGGTCTACGGCGACGTG
AAGGCGCGCATGGCGGCGAAGTCGGGGCCGCTCGAGTGCGCCGTGTGCCTCGCCGAGTTC
GCGGACAGCGACGAGCTACGGGTGCTCCCGGCGTGCTGTCACGTGTTCCACCCGGACTGC
ATCGACCCCTGGCTCGCCGCCGCCGTCACGTGCCCGCTCTGCCGCGCCAACCTCACGGCG
CCACCGGTGTCGCTCGCCGCCGCCGAGAGCTCCGACCTGACGGCGCCGGAGGAGGCGGTG
CAGGAGGAAGAGTCGGAGGAGCTCGACGAGGCGTCCCTGATGGCCACCTTCACGCCGGAA
TCCGTCATCGACTTCGGCGCGACGCACGACCATGAATTCGACAGAGCAGGGTACCCTCAC
TACCGGAGGACGCAGTCGGCCATGGACGCCGCGCCGGACCGGCACACGCTGAGGCTACCG
GAGCACGTCATGAAGGAGCTCGCCGCCGACCGCAGGCACCGGCGCGCCGCGAGCCTCGCC
GGGTACCCGGACAGCGTGGAGAGGACGCCGAGGTGGCTGACGTCGCTCTGGCGATCGGTG
TCGTGGCAGAGGCAGAGCCGGGCGGACTGGGACGCCGGAGAGGAGCACGGCGGCAGCAAA
AGGGTTCACCCGGTCGCCGGAGCTCAGGACGAGACACCCAGCGGGTCCGGCTCCGATGGG
AGCAAGGAGAACTCCGATTCTGACGCGTTAAACCGAGTTTGA

Peptide Sequence

PEP ID

Os03t0188200-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:4616778:4618026:-1 gene:Os03g0188200 transcript:Os03t0188200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0188200-01)
Sequence

MAHRRIALAVLVTLLLSAFRPCLAQQSNDDTSKHHRSATAGGFTPTTVVVLVALITAFVL
LTVFSVLINRCAQARAPPRRAFRSTASHQPVGGAAAASRASRGLDKEVVEAFPTAVYGDV
KARMAAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCIDPWLAAAVTCPLCRANLTA
PPVSLAAAESSDLTAPEEAVQEEESEELDEASLMATFTPESVIDFGATHDHEFDRAGYPH
YRRTQSAMDAAPDRHTLRLPEHVMKELAADRRHRRAASLAGYPDSVERTPRWLTSLWRSV
SWQRQSRADWDAGEEHGGSKRVHPVAGAQDETPSGSGSDGSKENSDSDALNRV

Transcript Sequence

Transcript ID

Os03t0188200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:4616778:4618026:-1 gene:Os03g0188200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0188200-01)
Sequence

ACTCCATTCCTTCCAAAAGAAAACTCGAAACCTCCCCCTCTCCGGCCGCCGGCGAGCGGC
TCATCCATCCACCCCACCTTGGCCGGAGACGGCGGCAATGGCTCACCGCCGGATCGCGCT
CGCCGTCCTCGTGACGCTGCTCTTGTCGGCGTTCCGCCCTTGCCTGGCGCAACAGAGCAA
CGACGACACGAGCAAACACCACCGGAGCGCCACGGCCGGCGGGTTCACGCCGACCACCGT
CGTCGTGCTCGTGGCTCTCATCACCGCCTTCGTCCTCCTCACCGTGTTCTCCGTCCTCAT
CAACCGCTGCGCCCAGGCGCGCGCTCCCCCGCGCCGGGCGTTCCGCAGCACGGCGTCCCA
TCAGCCCGTCGGCGGCGCCGCCGCCGCGTCCCGCGCCTCGCGTGGCCTCGACAAGGAGGT
CGTGGAGGCGTTCCCCACGGCGGTCTACGGCGACGTGAAGGCGCGCATGGCGGCGAAGTC
GGGGCCGCTCGAGTGCGCCGTGTGCCTCGCCGAGTTCGCGGACAGCGACGAGCTACGGGT
GCTCCCGGCGTGCTGTCACGTGTTCCACCCGGACTGCATCGACCCCTGGCTCGCCGCCGC
CGTCACGTGCCCGCTCTGCCGCGCCAACCTCACGGCGCCACCGGTGTCGCTCGCCGCCGC
CGAGAGCTCCGACCTGACGGCGCCGGAGGAGGCGGTGCAGGAGGAAGAGTCGGAGGAGCT
CGACGAGGCGTCCCTGATGGCCACCTTCACGCCGGAATCCGTCATCGACTTCGGCGCGAC
GCACGACCATGAATTCGACAGAGCAGGGTACCCTCACTACCGGAGGACGCAGTCGGCCAT
GGACGCCGCGCCGGACCGGCACACGCTGAGGCTACCGGAGCACGTCATGAAGGAGCTCGC
CGCCGACCGCAGGCACCGGCGCGCCGCGAGCCTCGCCGGGTACCCGGACAGCGTGGAGAG
GACGCCGAGGTGGCTGACGTCGCTCTGGCGATCGGTGTCGTGGCAGAGGCAGAGCCGGGC
GGACTGGGACGCCGGAGAGGAGCACGGCGGCAGCAAAAGGGTTCACCCGGTCGCCGGAGC
TCAGGACGAGACACCCAGCGGGTCCGGCTCCGATGGGAGCAAGGAGAACTCCGATTCTGA
CGCGTTAAACCGAGTTTGAATTTTGTTTTCTCCTCTTCTTTTTTTTTCTTGTGCTTCGTT
CTAATTGTGCAGCGGTGTAGTAATACAAATTAACGATAAACTACCTTGC