Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0187400-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:4573148:4575550:1 gene:Os03g0187400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, FYVE/PHD-type domain containing protein. (Os03t0187400-01)
Sequence

ATGGGGATTGACAAGTCAGCCGCCGGATCGTCGTCGTCGCCGCCGCGGCCGGTTGCCGCC
GCCACGGCGGCCGTGTGCTGCATGTGCGGCGACCGTGGCCTCCTGCCGGAGCTGTTCCGC
TGCGCCGCCTGCGCCGTCCGCTCCCAGCACACATACTGCTCGGAGCGATACCCCAAGGCA
GAGTCGTACGGCACGTGCAACTGGTGCCTGAGGGCGGATCAAGGAAGCGACGGCGGCGGC
GGCGGCGCCGCCGCCGCCTCGAGCTCGATGGCGAGGCCGCCCACCGGCGCCAGAGCAGCG
GCCGGCGGCGATCCAGCTGCCAGCAGCAGATCGACGGCGGCGGCGAAGGTCGTCGCCGCC
CGCGGGCACTTCGCTGCCGACCTGAGCAAGCCCATCAAGAAGCCACCGCCGGCGCCGGCG
CCGCTGCCGCCGCCGTCGCCGGCACAGCGGCGTATCCTGCTGCGGCGGTCGGCGTCGGAC
CTGGGCGGCCGCGTCCGCCGCGCCGACCACGACGCGCCGCCGCCGCTGTCGCCCGGCGTC
GCGAGGGGCAGGCCGAGGGTTCGGAGGTACAAGCTCTTGGAAGAGGTGATCACTACTAGC
TAG

Peptide Sequence

PEP ID

Os03t0187400-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:4573148:4575550:1 gene:Os03g0187400 transcript:Os03t0187400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, FYVE/PHD-type domain containing protein. (Os03t0187400-01)
Sequence

MGIDKSAAGSSSSPPRPVAAATAAVCCMCGDRGLLPELFRCAACAVRSQHTYCSERYPKA
ESYGTCNWCLRADQGSDGGGGGAAAASSSMARPPTGARAAAGGDPAASSRSTAAAKVVAA
RGHFAADLSKPIKKPPPAPAPLPPPSPAQRRILLRRSASDLGGRVRRADHDAPPPLSPGV
ARGRPRVRRYKLLEEVITTS

Transcript Sequence

Transcript ID

Os03t0187400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:4573148:4575550:1 gene:Os03g0187400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, FYVE/PHD-type domain containing protein. (Os03t0187400-01)
Sequence

ATGGCAGCAGCAGCAGCAGGAGGAGGACAAAATTAAAGGAGGGCAGCTTCCTTCCTTCCT
TCTACAAGATCTTGAGATGCGTGAAGTCGGCAGGCGCCGCATTACCACCTCCAATTCCTC
CTCTTCCCAAACCACATTCGACTTCGACTTCGCCATCAGCAACCAATCTGCTCCCTTTTG
AAGTTTCGATCCGATCCATTCCCAATCCCATCCCATCCCATCGATCGATCGATCTCATGC
GGCAGCTTTACCAATCGATGCGCTTGAGATAGCCGCCCGATTCATCGATCGATCTGCCGA
GATATATATGGGGATTGACAAGTCAGCCGCCGGATCGTCGTCGTCGCCGCCGCGGCCGGT
TGCCGCCGCCACGGCGGCCGTGTGCTGCATGTGCGGCGACCGTGGCCTCCTGCCGGAGCT
GTTCCGCTGCGCCGCCTGCGCCGTCCGCTCCCAGCACACATACTGCTCGGAGCGATACCC
CAAGGCAGAGTCGTACGGCACGTGCAACTGGTGCCTGAGGGCGGATCAAGGAAGCGACGG
CGGCGGCGGCGGCGCCGCCGCCGCCTCGAGCTCGATGGCGAGGCCGCCCACCGGCGCCAG
AGCAGCGGCCGGCGGCGATCCAGCTGCCAGCAGCAGATCGACGGCGGCGGCGAAGGTCGT
CGCCGCCCGCGGGCACTTCGCTGCCGACCTGAGCAAGCCCATCAAGAAGCCACCGCCGGC
GCCGGCGCCGCTGCCGCCGCCGTCGCCGGCACAGCGGCGTATCCTGCTGCGGCGGTCGGC
GTCGGACCTGGGCGGCCGCGTCCGCCGCGCCGACCACGACGCGCCGCCGCCGCTGTCGCC
CGGCGTCGCGAGGGGCAGGCCGAGGGTTCGGAGGTACAAGCTCTTGGAAGAGGTGATCAC
TACTAGCTAGCCGTATATATATAGAGAGAGAGGAACAGCCATGCATATATAGATGCATGC
ACGGTATTATGTGTAGACAGCTAGTAGCATATTGCAGCAAGAGCTACCTGCACTGTGTTT
AAGCTGTTAATATGCCCCTTAATTACTGTACAGGAGAACATCTTCAGTTCTTCACTTGAT
CATGGGTTAATCAAAGTAAGAGAGTTCAGACTTTC