Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0186900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:4541351:4543092:1 gene:Os03g0186900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aspartic protease 25, rice anther down-regulated by chilling 1 description:Radc1. (Os03t0186900-01)
Sequence

ATGGCGGCCACCACCACCATCCCTCTCCTCCTCCTCCTCCTGGCCGCCACCGTCGCCGCC
GCCGCCGCCGAGCTCTCCGTGTACCACAACGTGCACCCCTCGTCGCCGTCCCCGCTCGAG
TCCATCATCGCGCTCGCCCGCGACGACGACGCCCGCCTCCTCTTCCTCTCCTCCAAGGCA
GCCACCGCCGGCGTCTCCTCCGCCCCCGTCGCCTCCGGCCAGGCCCCCCCGTCCTACGTC
GTCCGGGCCGGCCTCGGCTCGCCGTCGCAGCAGCTGCTGCTGGCGCTCGACACCAGCGCC
GACGCGACGTGGGCGCACTGCTCGCCGTGCGGCACGTGCCCGAGCAGCAGCCTCTTCGCC
CCGGCCAACTCCTCCTCCTACGCCTCCCTCCCGTGCTCCTCGTCGTGGTGCCCGCTGTTC
CAGGGCCAGGCGTGCCCGGCGCCGCAGGGCGGCGGCGACGCGGCGCCGCCGCCGGCGACG
CTGCCGACGTGCGCCTTCTCCAAGCCGTTCGCCGACGCGTCGTTCCAGGCGGCGCTCGCC
AGCGACACGCTGAGGCTGGGCAAGGACGCCATCCCGAACTACACGTTCGGGTGCGTGAGC
TCGGTGACGGGGCCGACGACGAACATGCCAAGGCAAGGGCTGCTCGGCCTCGGGCGTGGC
CCCATGGCGCTGCTCTCCCAGGCCGGGAGCTTGTACAATGGCGTCTTCTCCTACTGCCTC
CCGAGCTACAGGTCATACTACTTCTCCGGCTCGCTCCGGCTGGGCGCCGGCGGCGGGCAG
CCGAGGAGCGTCCGGTACACGCCGATGCTGAGGAACCCGCACAGGTCGTCTCTCTACTAC
GTGAACGTGACGGGGCTCAGCGTGGGGCACGCGTGGGTGAAGGTCCCCGCGGGATCGTTC
GCGTTCGACGCCGCCACCGGCGCCGGCACGGTGGTGGACTCCGGCACGGTGATCACGCGG
TGGACGGCGCCGGTGTACGCGGCGCTGCGGGAGGAGTTCCGGCGGCAGGTAGCGGCGCCG
AGCGGGTACACGTCGCTGGGCGCGTTCGACACGTGCTTCAACACCGACGAGGTGGCCGCC
GGCGGAGCCCCCGCGGTGACGGTGCACATGGACGGCGGCGTGGACCTGGCGCTGCCGATG
GAGAACACGCTCATCCACAGCAGCGCCACGCCGCTGGCCTGCCTCGCCATGGCCGAGGCG
CCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGG
GTCGTCTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTAA

Peptide Sequence

PEP ID

Os03t0186900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:4541351:4543092:1 gene:Os03g0186900 transcript:Os03t0186900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aspartic protease 25, rice anther down-regulated by chilling 1 description:Radc1. (Os03t0186900-01)
Sequence

MAATTTIPLLLLLLAATVAAAAAELSVYHNVHPSSPSPLESIIALARDDDARLLFLSSKA
ATAGVSSAPVASGQAPPSYVVRAGLGSPSQQLLLALDTSADATWAHCSPCGTCPSSSLFA
PANSSSYASLPCSSSWCPLFQGQACPAPQGGGDAAPPPATLPTCAFSKPFADASFQAALA
SDTLRLGKDAIPNYTFGCVSSVTGPTTNMPRQGLLGLGRGPMALLSQAGSLYNGVFSYCL
PSYRSYYFSGSLRLGAGGGQPRSVRYTPMLRNPHRSSLYYVNVTGLSVGHAWVKVPAGSF
AFDAATGAGTVVDSGTVITRWTAPVYAALREEFRRQVAAPSGYTSLGAFDTCFNTDEVAA
GGAPAVTVHMDGGVDLALPMENTLIHSSATPLACLAMAEAPQNVNSVVNVIANLQQQNIR
VVFDVANSRVGFAKESCN

Transcript Sequence

Transcript ID

Os03t0186900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:4541351:4543092:1 gene:Os03g0186900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aspartic protease 25, rice anther down-regulated by chilling 1 description:Radc1. (Os03t0186900-01)
Sequence

CTCACTCCCCTCAGTGACACTCTCTTAGCAAGCAAGCTAGCTTAGCCAGGAGAGCTCCAT
TGCCATGGCGGCCACCACCACCATCCCTCTCCTCCTCCTCCTCCTGGCCGCCACCGTCGC
CGCCGCCGCCGCCGAGCTCTCCGTGTACCACAACGTGCACCCCTCGTCGCCGTCCCCGCT
CGAGTCCATCATCGCGCTCGCCCGCGACGACGACGCCCGCCTCCTCTTCCTCTCCTCCAA
GGCAGCCACCGCCGGCGTCTCCTCCGCCCCCGTCGCCTCCGGCCAGGCCCCCCCGTCCTA
CGTCGTCCGGGCCGGCCTCGGCTCGCCGTCGCAGCAGCTGCTGCTGGCGCTCGACACCAG
CGCCGACGCGACGTGGGCGCACTGCTCGCCGTGCGGCACGTGCCCGAGCAGCAGCCTCTT
CGCCCCGGCCAACTCCTCCTCCTACGCCTCCCTCCCGTGCTCCTCGTCGTGGTGCCCGCT
GTTCCAGGGCCAGGCGTGCCCGGCGCCGCAGGGCGGCGGCGACGCGGCGCCGCCGCCGGC
GACGCTGCCGACGTGCGCCTTCTCCAAGCCGTTCGCCGACGCGTCGTTCCAGGCGGCGCT
CGCCAGCGACACGCTGAGGCTGGGCAAGGACGCCATCCCGAACTACACGTTCGGGTGCGT
GAGCTCGGTGACGGGGCCGACGACGAACATGCCAAGGCAAGGGCTGCTCGGCCTCGGGCG
TGGCCCCATGGCGCTGCTCTCCCAGGCCGGGAGCTTGTACAATGGCGTCTTCTCCTACTG
CCTCCCGAGCTACAGGTCATACTACTTCTCCGGCTCGCTCCGGCTGGGCGCCGGCGGCGG
GCAGCCGAGGAGCGTCCGGTACACGCCGATGCTGAGGAACCCGCACAGGTCGTCTCTCTA
CTACGTGAACGTGACGGGGCTCAGCGTGGGGCACGCGTGGGTGAAGGTCCCCGCGGGATC
GTTCGCGTTCGACGCCGCCACCGGCGCCGGCACGGTGGTGGACTCCGGCACGGTGATCAC
GCGGTGGACGGCGCCGGTGTACGCGGCGCTGCGGGAGGAGTTCCGGCGGCAGGTAGCGGC
GCCGAGCGGGTACACGTCGCTGGGCGCGTTCGACACGTGCTTCAACACCGACGAGGTGGC
CGCCGGCGGAGCCCCCGCGGTGACGGTGCACATGGACGGCGGCGTGGACCTGGCGCTGCC
GATGGAGAACACGCTCATCCACAGCAGCGCCACGCCGCTGGCCTGCCTCGCCATGGCCGA
GGCGCCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACAT
CCGGGTCGTCTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTA
ATTAAGAATTAAGATTAATTAAGATGATCTACCGCTATCTCATCTAGAGCCAAGCTGCTG
CTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGA
AATCACGGTGTCCTCTTGTGGGCTTGTAGCTTTCCGATCTGTGCAATAAGGTATACGTGA
CATCAAAACTTGGTCACGGGCGCCTGTCTCATCTGTATGTGCCAATAGGGCTATATCTAG
GTGATTACGTACGTACTCAGGGTTTTACCAGTGTGAATTGGTATGTTTACATCGATCTTA
AAGATCTTCATCATTTGCATCGCTAGAAAAACTTCATATGAGAATACCAAATCAAGGGCA
GC