Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0184000-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:4410090:4414505:1 gene:Os03g0184000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOENE DESATURASE description:Similar to Phytoene desaturase (Fragment). (Os03t0184000-00)
Sequence

ATGGATACTGGCTGCCTGTCATCTATGAACATAACTGGAACCAGCCAAGCAAGATCTTTT
GCGGGACAACTTCCTACTCATAGGTGCTTCGCAAGTAGCAGCATCCAAGCACTGAAAAGT
AGTCAGCATGTGAGCTTTGGAGTGAAATCTCTTGTCTTAAGGAATAAAGGAAAAAGATTC
CGTCGGAGGCTCGGTGCTCTACAGGTTGTTTGCCAGGACTTTCCAAGACCTCCACTAGAA
AACACAATAAACTTTTTGGAAGCTGGACAACTATCTTCATTTTTCAGAAACAGTGAACAA
CCCACTAAACCATTACAGGTCGTGATTGCTGGAGCAGGATTAGCTGGTTTATCAACGGCA
AAATATCTGGCAGATGCTGGTCATAAACCCATATTGCTTGAGGCAAGGGATGTTTTGGGT
GGAAAGATAGCTGCTTGGAAGGATGAAGATGGAGATTGGTATGAAACTGGGCTTCATATC
TTTTTTGGAGCTTATCCCAACATACAGAACTTGTTTGGCGAGCTTGGTATTAATGATCGG
TTGCAATGGAAGGAACACTCCATGATATTTGCCATGCCAAACAAGCCAGGAGAATTCAGC
CGGTTTGATTTTCCTGAAACATTGCCTGCACCCTTAAATGGAATATGGGCCATACTAAGA
AACAATGAAATGCTAACTTGGCCAGAGAAGGTGAAGTTTGCTCTTGGACTTTTGCCAGCA
ATGGTTGGTGGCCAAGCTTATGTTGAAGCTCAAGATGGTTTTACTGTTTCTGAGTGGATG
AAAAAGCAGGGTGTTCCTGATCGAGTGAACGATGAGGTTTTCATTGCAATGTCAAAGGCA
CTTAATTTCATAAATCCTGATGAGTTATCCATGCAGTGCATTCTGATTGCTTTAAACCGA
TTTCTTCAGGAGAAGCATGGTTCTAAGATGGCATTCTTGGATGGTAATCCTCCTGAAAGG
TTATGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCT
CGTATTCAGAAAATAGAACTTAATCCTGATGGAACAGTGAAACACTTTGCACTTACTGAT
GGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGTTGATATCTTGAAGCTT
CTTGTACCTCAAGAGTGGAAAGAAATATCTTATTTCAAGAAGCTGGAGAAGTTGGTGGGA
GTTCCTGTTATAAATGTTCATATATGGTTTGATAGAAAACTGAAGAACACATATGACCAC
CTTCTTTTCAGCAGGAGTTCACTTTTAAGTGTTTATGCGGACATGTCAGTAACTTGCAAG
GAATACTATGATCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGAGGAATGG
GTTGGACGGAGTGACACTGAAATCATCGAAGCAACTATGCAAGAGCTAGCCAAGCTATTT
CCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTGAAGTATCATGTTGTGAAG
ACACCAAGATCTGTTTACAAGACTATCCCGGACTGTGAACCTTGCCGACCTCTGCAAAGA
TCACCGATTGAAGGGTTCTATCTAGCTGGTGACTACACAAAGCAGAAATATTTGGCTTCG
ATGGAGGGTGCAGTTCTATCTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATAAA
ATGCTATCTCGTAGGAGCCTGAAAAGTCTGCAGTCTGAAGTTCCTGTTGCCTCCTAG

Peptide Sequence

PEP ID

Os03t0184000-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:4410090:4414505:1 gene:Os03g0184000 transcript:Os03t0184000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOENE DESATURASE description:Similar to Phytoene desaturase (Fragment). (Os03t0184000-00)
Sequence

MDTGCLSSMNITGTSQARSFAGQLPTHRCFASSSIQALKSSQHVSFGVKSLVLRNKGKRF
RRRLGALQVVCQDFPRPPLENTINFLEAGQLSSFFRNSEQPTKPLQVVIAGAGLAGLSTA
KYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDR
LQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPA
MVGGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNR
FLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTD
GTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDH
LLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLF
PDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLAS
MEGAVLSGKLCAQSVVEDYKMLSRRSLKSLQSEVPVAS

Transcript Sequence

Transcript ID

Os03t0184000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:4410090:4414505:1 gene:Os03g0184000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOENE DESATURASE description:Similar to Phytoene desaturase (Fragment). (Os03t0184000-00)
Sequence

ATGGATACTGGCTGCCTGTCATCTATGAACATAACTGGAACCAGCCAAGCAAGATCTTTT
GCGGGACAACTTCCTACTCATAGGTGCTTCGCAAGTAGCAGCATCCAAGCACTGAAAAGT
AGTCAGCATGTGAGCTTTGGAGTGAAATCTCTTGTCTTAAGGAATAAAGGAAAAAGATTC
CGTCGGAGGCTCGGTGCTCTACAGGTTGTTTGCCAGGACTTTCCAAGACCTCCACTAGAA
AACACAATAAACTTTTTGGAAGCTGGACAACTATCTTCATTTTTCAGAAACAGTGAACAA
CCCACTAAACCATTACAGGTCGTGATTGCTGGAGCAGGATTAGCTGGTTTATCAACGGCA
AAATATCTGGCAGATGCTGGTCATAAACCCATATTGCTTGAGGCAAGGGATGTTTTGGGT
GGAAAGATAGCTGCTTGGAAGGATGAAGATGGAGATTGGTATGAAACTGGGCTTCATATC
TTTTTTGGAGCTTATCCCAACATACAGAACTTGTTTGGCGAGCTTGGTATTAATGATCGG
TTGCAATGGAAGGAACACTCCATGATATTTGCCATGCCAAACAAGCCAGGAGAATTCAGC
CGGTTTGATTTTCCTGAAACATTGCCTGCACCCTTAAATGGAATATGGGCCATACTAAGA
AACAATGAAATGCTAACTTGGCCAGAGAAGGTGAAGTTTGCTCTTGGACTTTTGCCAGCA
ATGGTTGGTGGCCAAGCTTATGTTGAAGCTCAAGATGGTTTTACTGTTTCTGAGTGGATG
AAAAAGCAGGGTGTTCCTGATCGAGTGAACGATGAGGTTTTCATTGCAATGTCAAAGGCA
CTTAATTTCATAAATCCTGATGAGTTATCCATGCAGTGCATTCTGATTGCTTTAAACCGA
TTTCTTCAGGAGAAGCATGGTTCTAAGATGGCATTCTTGGATGGTAATCCTCCTGAAAGG
TTATGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCT
CGTATTCAGAAAATAGAACTTAATCCTGATGGAACAGTGAAACACTTTGCACTTACTGAT
GGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGTTGATATCTTGAAGCTT
CTTGTACCTCAAGAGTGGAAAGAAATATCTTATTTCAAGAAGCTGGAGAAGTTGGTGGGA
GTTCCTGTTATAAATGTTCATATATGGTTTGATAGAAAACTGAAGAACACATATGACCAC
CTTCTTTTCAGCAGGAGTTCACTTTTAAGTGTTTATGCGGACATGTCAGTAACTTGCAAG
GAATACTATGATCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGAGGAATGG
GTTGGACGGAGTGACACTGAAATCATCGAAGCAACTATGCAAGAGCTAGCCAAGCTATTT
CCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTGAAGTATCATGTTGTGAAG
ACACCAAGATCTGTTTACAAGACTATCCCGGACTGTGAACCTTGCCGACCTCTGCAAAGA
TCACCGATTGAAGGGTTCTATCTAGCTGGTGACTACACAAAGCAGAAATATTTGGCTTCG
ATGGAGGGTGCAGTTCTATCTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATAAA
ATGCTATCTCGTAGGAGCCTGAAAAGTCTGCAGTCTGAAGTTCCTGTTGCCTCCTAG