Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0182400-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:4327773:4336225:1 gene:Os03g0182400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SAC domain protein 1 (FIG4-like protein AtFIG4). (Os03t0182400-01)
Sequence	ATGGAGGCTATGGCGGGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCG AAATTTTATCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGAC AGGATGGAGCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATGAA TGCCAAGAACTGCTGTGGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTT GTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTT CTAATTACCAGAAGAAGGAAAGTTGGTACAATCTGCAGTCATGAAATATATTCTGTCGGC AAGAGCGAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGG GATGAGAACAGATATAAACGGCTCCTTTGCTCGGTCGATCTCTCGAAAGACTTCTTCTTC AGCTACTCTTACAATATCATGCGCAGCCTTCAGAAGAACATAACTGACAAGAATACTGGG CAAGTTGTTTATGAGACAATGTTTGTTTGGAACGAGTTTCTGTCTCGAGCTATCCGGAAC CATCTCAAGAATACAACGTGGACTGTTGCCTTAATCCATGGATTTTTTAAACAGTCAAAG CTCTCAGTAGCTGGGAAGGAATTCTGGTTGACACTTATAGCAAGGCGCTCACGTCATTTT GCTGGAACCAGATTCTTGAAAAGAGGTGTTAATGAAAAGGGTAGGGTTGCCAATGATGTT GAGACTGAACAAATTGTTTTTGAGGACACACCAGATGAAATACCACATCAGATATCATCT GTTGTACAACATAGAGGATCCATACCTCTTATATGGTTTCAGGAAACTTCAAGACTCAAC ATTAGGCCAGATATCATACTGAAACCGGATGTAGACTACAAGACAACTCGCCTTCATTTT GAGAACCTTGCACTTAGATATGGGAACCCAATAATTATCTTAAACTTGATCAAGACTCGT GAGAAGAAACCTCGTGAATCTTTGCTCCGTGCAGAATTCGCAAAGGCTATACATTATATT AACAAGGGGCTGCCAGATGACAAACGTCTAAAGTTTTTACACATGGATCTGAGTAAGCTT TCTAGAAGGAAAGGTACCAATGTGCTTTCGCTGTTGAACAAGGTAGCATCAGATGTGTTG GATCTAACTGACTTCCTCCACTGTGAGATAACTACATCAAAGTATGAGGATGCATCAAGT GGACAAGGAGCTGTTGCCAACTCAGGTGACATCGAAAACATCCAGGATCAAAATTTATGT GCAACTAAGCTAGTACCTCTTTTACTGCAAAAGGGTGTCCTCAGGACTAACTGCATAGAC TGCTTGGACCGCACAAATGTTGCACAGTTTGCGTATGGCTTAGCTGCTTTAGGGCGTCAA CTTCATGTGCTCCAGCTCAATGAAACCCCTACAATTGAATTGCATGCTCCTTTGGCCGAT GATCTTATGGATTTCTATGAACGGATGGGTGATACGCTAGCTATTCAATATGGTGGCTCT GCTGCTCACAACAAGATCTTCTGTGAGCAAAGAGGCCAATGGAAGGCAGCAACACAATCT CAGGAGTTCCTCCGGACCCTTCAGCGCTACTACAGTAATGCCTACACTGATCCTGAGAAG CAGGATTCTATAAATGTGTTCTTGGGTCATTTCCAACCACAAGAAGGAAAACCTGCGCTT TGGAAATTGGACTCAGATCAGCATTACAACATTGGCAGGCAAGGAACTTTAACTGAAGAA ACTGGGAGATCATTCATAAAGAGGTCGTTATCGGACGGTAATATTTTATGTGACAACACT GGTGGACCTGTATCTGACTGTAATGTTGGAAAAAACAACACAAGCTCAGAATTGCTCCCA ATGCAACCACTGGAGGATATTAGAGAACCTTCTGATTCTGCACCAGAGATCTCTATAGAA CCTAACCCGTGCTCCAGTACAAACTATAGCACATTGTCTGGGAGACACTCAATTTCAGAA GAGCGGCAGAATTATTTGAGAAGATTGGGTTATCCTGAATTGCACTCTTCAAACTTTCTT GATCTTGATCTGTTATCATCTTCAGGAAATTCTTGTGAGGAGGAAATTTATGAGAGGTCA TCACTCATCAATTCACCCATGGATGTTGTCAGTATTGAATCAACTACATCATACAGTGAA CAGGGACACAATGATGAGCAGGGAAGAGATGACACAGATCTGTCACGCTCAAGCAGCCAA ATGTCAGACATCCGTGACTACTCTGACCGCTTCACGCATTGGGTGGATGGCGGAGGCATG CTTTGCTACTAG

Peptide Sequence

PEP ID	Os03t0182400-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:4327773:4336225:1 gene:Os03g0182400 transcript:Os03t0182400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SAC domain protein 1 (FIG4-like protein AtFIG4). (Os03t0182400-01)
Sequence	MEAMAGDKFLQKFRLYETRSKFYLIGRDKTRTLWRVLKIDRMEPTELEIEEDHTSYTENE CQELLWRIHEGNRLTGGLKFVTKCYGIVGFIKFLGPYYMVLITRRRKVGTICSHEIYSVG KSELIAIPSPIVWPNVAYSRDENRYKRLLCSVDLSKDFFFSYSYNIMRSLQKNITDKNTG QVVYETMFVWNEFLSRAIRNHLKNTTWTVALIHGFFKQSKLSVAGKEFWLTLIARRSRHF AGTRFLKRGVNEKGRVANDVETEQIVFEDTPDEIPHQISSVVQHRGSIPLIWFQETSRLN IRPDIILKPDVDYKTTRLHFENLALRYGNPIIILNLIKTREKKPRESLLRAEFAKAIHYI NKGLPDDKRLKFLHMDLSKLSRRKGTNVLSLLNKVASDVLDLTDFLHCEITTSKYEDASS GQGAVANSGDIENIQDQNLCATKLVPLLLQKGVLRTNCIDCLDRTNVAQFAYGLAALGRQ LHVLQLNETPTIELHAPLADDLMDFYERMGDTLAIQYGGSAAHNKIFCEQRGQWKAATQS QEFLRTLQRYYSNAYTDPEKQDSINVFLGHFQPQEGKPALWKLDSDQHYNIGRQGTLTEE TGRSFIKRSLSDGNILCDNTGGPVSDCNVGKNNTSSELLPMQPLEDIREPSDSAPEISIE PNPCSSTNYSTLSGRHSISEERQNYLRRLGYPELHSSNFLDLDLLSSSGNSCEEEIYERS SLINSPMDVVSIESTTSYSEQGHNDEQGRDDTDLSRSSSQMSDIRDYSDRFTHWVDGGGM LCY

Transcript Sequence

Transcript ID	Os03t0182400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:4327773:4336225:1 gene:Os03g0182400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SAC domain protein 1 (FIG4-like protein AtFIG4). (Os03t0182400-01)
Sequence	CTCCCCTTCTCTGCGTGTTTTTGTGGACGACGGCGTCGTCGCAAGCTTCTTGTGGCCATC GTCTTCCCCCCCTCTCCTCCTTCCTCGCATCCTCTCCTCCCTATCTCTCACAAAAATCCA TTCTTGCACAGGGAATTTTGCCTACTCCTATTTACGATCCTTCTCTTCCCCCCTCTGGGC GGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCGTCTTGTTGCTGCTGACGAGCCCGCT GATTTTGGCTCGATTTAATCCCATTTTACGGGTGTTTTGCATCTATTGGAGATCCAAAGG TGCGCCCTTTCTGGGGGTATCTTGGGGGGAATTGGATCGATTTCGATCTGTCTGAGTGGT TCTCTGGGCGTTGTTGGTGCGTTCTTGATCCGAGAGGTGAGAGATTTGGTTGGATTTTCT CCCTGGAGCATTTGGTGTGCTCGAGCAGGATGCTCTATTTGAAGCAGCCGACGAGGAGCT GAACTACGCGGAGTTGTTTTTCCCCTCTGAATTTTCTTGGTTTGGATTTCGCGGTGGTCG TGTGGTTTGCTTTGCTGATCTGATCTGATGGAGGCTATGGCGGGCGACAAATTCCTTCAG AAGTTCCGGCTCTACGAGACCAGATCGAAATTTTATCTTATCGGAAGGGACAAGACAAGG ACTCTATGGAGGGTGCTGAAGATTGACAGGATGGAGCCTACTGAGCTGGAAATCGAGGAA GATCATACAAGTTACACAGAGAATGAATGCCAAGAACTGCTGTGGCGAATTCATGAGGGG AATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATA AAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAGGAAAGTTGGTACAATC TGCAGTCATGAAATATATTCTGTCGGCAAGAGCGAATTGATTGCAATTCCAAGTCCTATT GTGTGGCCCAACGTGGCTTATTCTAGGGATGAGAACAGATATAAACGGCTCCTTTGCTCG GTCGATCTCTCGAAAGACTTCTTCTTCAGCTACTCTTACAATATCATGCGCAGCCTTCAG AAGAACATAACTGACAAGAATACTGGGCAAGTTGTTTATGAGACAATGTTTGTTTGGAAC GAGTTTCTGTCTCGAGCTATCCGGAACCATCTCAAGAATACAACGTGGACTGTTGCCTTA ATCCATGGATTTTTTAAACAGTCAAAGCTCTCAGTAGCTGGGAAGGAATTCTGGTTGACA CTTATAGCAAGGCGCTCACGTCATTTTGCTGGAACCAGATTCTTGAAAAGAGGTGTTAAT GAAAAGGGTAGGGTTGCCAATGATGTTGAGACTGAACAAATTGTTTTTGAGGACACACCA GATGAAATACCACATCAGATATCATCTGTTGTACAACATAGAGGATCCATACCTCTTATA TGGTTTCAGGAAACTTCAAGACTCAACATTAGGCCAGATATCATACTGAAACCGGATGTA GACTACAAGACAACTCGCCTTCATTTTGAGAACCTTGCACTTAGATATGGGAACCCAATA ATTATCTTAAACTTGATCAAGACTCGTGAGAAGAAACCTCGTGAATCTTTGCTCCGTGCA GAATTCGCAAAGGCTATACATTATATTAACAAGGGGCTGCCAGATGACAAACGTCTAAAG TTTTTACACATGGATCTGAGTAAGCTTTCTAGAAGGAAAGGTACCAATGTGCTTTCGCTG TTGAACAAGGTAGCATCAGATGTGTTGGATCTAACTGACTTCCTCCACTGTGAGATAACT ACATCAAAGTATGAGGATGCATCAAGTGGACAAGGAGCTGTTGCCAACTCAGGTGACATC GAAAACATCCAGGATCAAAATTTATGTGCAACTAAGCTAGTACCTCTTTTACTGCAAAAG GGTGTCCTCAGGACTAACTGCATAGACTGCTTGGACCGCACAAATGTTGCACAGTTTGCG TATGGCTTAGCTGCTTTAGGGCGTCAACTTCATGTGCTCCAGCTCAATGAAACCCCTACA ATTGAATTGCATGCTCCTTTGGCCGATGATCTTATGGATTTCTATGAACGGATGGGTGAT ACGCTAGCTATTCAATATGGTGGCTCTGCTGCTCACAACAAGATCTTCTGTGAGCAAAGA GGCCAATGGAAGGCAGCAACACAATCTCAGGAGTTCCTCCGGACCCTTCAGCGCTACTAC AGTAATGCCTACACTGATCCTGAGAAGCAGGATTCTATAAATGTGTTCTTGGGTCATTTC CAACCACAAGAAGGAAAACCTGCGCTTTGGAAATTGGACTCAGATCAGCATTACAACATT GGCAGGCAAGGAACTTTAACTGAAGAAACTGGGAGATCATTCATAAAGAGGTCGTTATCG GACGGTAATATTTTATGTGACAACACTGGTGGACCTGTATCTGACTGTAATGTTGGAAAA AACAACACAAGCTCAGAATTGCTCCCAATGCAACCACTGGAGGATATTAGAGAACCTTCT GATTCTGCACCAGAGATCTCTATAGAACCTAACCCGTGCTCCAGTACAAACTATAGCACA TTGTCTGGGAGACACTCAATTTCAGAAGAGCGGCAGAATTATTTGAGAAGATTGGGTTAT CCTGAATTGCACTCTTCAAACTTTCTTGATCTTGATCTGTTATCATCTTCAGGAAATTCT TGTGAGGAGGAAATTTATGAGAGGTCATCACTCATCAATTCACCCATGGATGTTGTCAGT ATTGAATCAACTACATCATACAGTGAACAGGGACACAATGATGAGCAGGGAAGAGATGAC ACAGATCTGTCACGCTCAAGCAGCCAAATGTCAGACATCCGTGACTACTCTGACCGCTTC ACGCATTGGGTGGATGGCGGAGGCATGCTTTGCTACTAGAGCTATAAAATTGTCTTGGTG ACATCTCAGCAAAAGGATTCAACAGCAGAAGCTATCGCAGCTACATTAAAGGAAACACTC GAAGTCAAGCTACATCTGCTGCAAACTGCAACGGTCTCGTGATCGAAGAGATCATCACAA CAAATGGAAGAAACATCAACTTGGTTTGCCCAGAGAAAGTGCTCAAAGATGACAATCCAT TGGGGAATATGAAACCATTCTGACTCGGTTCGGTTGAGGTACACGATTGAATTTCTATGG TGAAGAAGAATTGACCATACTGAAGACAATAAATAGGAGAAACATATATCACATTCTTTG CAAGGGTTAGCTTAGTTAGAATCTTTGGCAATATGTTATAGGAAAAGGATAAAACAGAAA AAAGAACTTCTCAAACAAAAATGAAAAAAAAATGGAAATGCTAATCCCTGTTGTAAATAT GTTATAGTATTATACATATTTACCAATTTTTACTTTACTTGCTCTCTGTATGGAACTTGC CTTTTCAGTCTTCACTGTACAAAATACACTAATCGTTGGCAACACGGTAATGATTGCGAG ACAATCTAACAGGCCACACGGTACAGGAGGAAATGAGTTGTCAAGCCAATGTTTCAGTCA GCCTGGTTGTGTGTTTTTTTTTTTCCTTTCCAGAGATGTATGAAATTGCACCTGATGCAT GAACTAATTTTCTTCTGGGGTCCTGCTGATTCATGTTACCAGTATTGTCTTGCATGAACC CTGAACTCCATGATGAATGGGAGTGCTGTTGCAACATGATGGGAAATTACTATATTAACG AATCAAGATACAGGTTTGTGC