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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0179700-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:4181381:4182557:-1 gene:Os03g0179700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0140O07.11 protein. (Os03t0179700-00)
Sequence

ATGGGTGCGTACGCAGCTCTGACGCCGGTTGTTAGCAAGATCTTCTGCAGCAGCTCGCAA
GCCGTGCTGATGGTGCGCCGCCGCCCTCCCACGGTGAACGGCGGCGGGTTCGTCGTCACC
GACCGTGATCAGAGGGTCGTCTTCAGCGTCGACGGCTGCGGGATCATCGGTGCTAGCGGC
CAGCTGATCGTCAGGGACGGTGATGGCACTGCCATCCTCTTCATCCACAAGAAGGGAGGA
GTTGTTCAAGTGTTGAGCATTAACAATTGGTGGAAGGGATATCTCATGGACTATGGTGAA
CCCAGCAAGCTGGTTTTCAGCTTTCAAGATCCTAAGCCGGTGCTCTGCATGAACGGCGAT
GTCAGGGTCGCTGTTGAGCCAAAGGGAAGAAAGAGGCACTGGGATTATGAGGTGATCGGG
TCATTTTCTCAGAGAGCTTGCACTGTCAGGAGCCGAGCAGGCCATGTCGTAGCACAGATT
GGAGTGAAAGGGATGCTGGCTGGTAAGGACTTCTACCATGTGGTGGTGCAGCCAGGTTAT
GACCAGGCGTTTGTGGTTGGTGTAATTGCCATTCTTGACAACATCCATGGGGAATCGACA
AGGTGTTAA

Peptide Sequence

PEP ID

Os03t0179700-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:4181381:4182557:-1 gene:Os03g0179700 transcript:Os03t0179700-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0140O07.11 protein. (Os03t0179700-00)
Sequence

MGAYAALTPVVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCGIIGASG
QLIVRDGDGTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPVLCMNGD
VRVAVEPKGRKRHWDYEVIGSFSQRACTVRSRAGHVVAQIGVKGMLAGKDFYHVVVQPGY
DQAFVVGVIAILDNIHGESTRC

Transcript Sequence

Transcript ID

Os03t0179700-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:4181381:4182557:-1 gene:Os03g0179700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0140O07.11 protein. (Os03t0179700-00)
Sequence

TGTAAAAACAATTCATCGTTGATCACAACTAGTATTCGTAGCTCCAAGAACTGAAAGAGC
TACCGTATCAGATGGGTGCGTACGCAGCTCTGACGCCGGTTGTTAGCAAGATCTTCTGCA
GCAGCTCGCAAGCCGTGCTGATGGTGCGCCGCCGCCCTCCCACGGTGAACGGCGGCGGGT
TCGTCGTCACCGACCGTGATCAGAGGGTCGTCTTCAGCGTCGACGGCTGCGGGATCATCG
GTGCTAGCGGCCAGCTGATCGTCAGGGACGGTGATGGCACTGCCATCCTCTTCATCCACA
AGAAGGGAGGAGTTGTTCAAGTGTTGAGCATTAACAATTGGTGGAAGGGATATCTCATGG
ACTATGGTGAACCCAGCAAGCTGGTTTTCAGCTTTCAAGATCCTAAGCCGGTGCTCTGCA
TGAACGGCGATGTCAGGGTCGCTGTTGAGCCAAAGGGAAGAAAGAGGCACTGGGATTATG
AGGTGATCGGGTCATTTTCTCAGAGAGCTTGCACTGTCAGGAGCCGAGCAGGCCATGTCG
TAGCACAGATTGGAGTGAAAGGGATGCTGGCTGGTAAGGACTTCTACCATGTGGTGGTGC
AGCCAGGTTATGACCAGGCGTTTGTGGTTGGTGTAATTGCCATTCTTGACAACATCCATG
GGGAATCGACAAGGTGTTAATAGCAATCATTGGATAAGAATGTATTAACTAGCAAATTTG
TTTCAATTGCGTTAGTTCGTTATTAATCATGCTGCTAGATAACTTATTTTAACTTTTTGT
TGATACACTAGCAGCACACAATATGTTGTAAATATTGTAAATTGGTTTGGTGAGAAGTTT
ACTTAATTAAATACAAATAACATCTATGTAACTTAGTTTGCAGACCTTACTGATAGATGA
AAACTTCTATTTGTAAAACAAATATCTGTATGAATTCTCCATGTGGAAACACAAAGTTTT
C