Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0179100-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:4157591:4158512:1 gene:Os03g0179100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GERMIN-LIKE PROTEIN 3-1 description:Similar to predicted protein. (Os03t0179100-00)
Sequence

ATGCGAGCAGCCGTCGCCCATCGAATCCTCCTCTCGCTCGCCCTCTTCGCCGTCCTCTGC
AGATGCGATCCCGACCTCCTCTTCGACTACTGCGTCGCCGACACGGCGGCGGCGACCGCG
GCCGGGGCGTTCCACCTGAACGGCCTCGCCTGCATCGACCCGGCGCTGGCACGCGCCGAC
CACTTCGCCACGTCCGCGCTCTCCCGCGCCACCAACCCGGCCGCCACGCTCTACGGCTTC
AACGCGACGCTGACGAGCCCGGCCGCGTCGCTGCCCGGCGCCAACGCGCAGGGCCTCGCC
ATGGCGCGCATCGACCTCGCGCCGGGCGGCATGGCGCCGCCGCACTCCCACCCGCGCGCG
TCGGAGGCGGCGCTCGTCCTCAGCGGGAGCGTCCTGGTCGGGTTCGCCGACACGTCGTAC
CGGCTGTACACCCAGCTGCTGCGCGCCGGCGAGGCGTTCGTGTTCCCGAGGGCCATGGTG
CACTTCCTGTACAACATGGACACGGCAGCGCCGGCCGTCGTGCTGTCCGGGCTCAACAGC
CAGAGCCCCGGCGCGCAGCTCGTGCCCTTCTCGGCGTTCCGGACGGAGCCGCGGCTGCCG
GACGAGGTCCTCAAGAAGGCGTTCAAGATCACCGGCCAGGACGTGCAGAGGATCCAAAAA
CACCTCGGTGGACTATGA

Peptide Sequence

PEP ID

Os03t0179100-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:4157591:4158512:1 gene:Os03g0179100 transcript:Os03t0179100-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GERMIN-LIKE PROTEIN 3-1 description:Similar to predicted protein. (Os03t0179100-00)
Sequence

MRAAVAHRILLSLALFAVLCRCDPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARAD
HFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRA
SEAALVLSGSVLVGFADTSYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNS
QSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQKHLGGL

Transcript Sequence

Transcript ID

Os03t0179100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:4157591:4158512:1 gene:Os03g0179100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GERMIN-LIKE PROTEIN 3-1 description:Similar to predicted protein. (Os03t0179100-00)
Sequence

CTCGACCTAATCATCTAGAGAGTAGAGGCATATACTCCTTTCCCGCCTAAACTGGAGCCA
ACCTGATCGAGACGCAGCCATGCGAGCAGCCGTCGCCCATCGAATCCTCCTCTCGCTCGC
CCTCTTCGCCGTCCTCTGCAGATGCGATCCCGACCTCCTCTTCGACTACTGCGTCGCCGA
CACGGCGGCGGCGACCGCGGCCGGGGCGTTCCACCTGAACGGCCTCGCCTGCATCGACCC
GGCGCTGGCACGCGCCGACCACTTCGCCACGTCCGCGCTCTCCCGCGCCACCAACCCGGC
CGCCACGCTCTACGGCTTCAACGCGACGCTGACGAGCCCGGCCGCGTCGCTGCCCGGCGC
CAACGCGCAGGGCCTCGCCATGGCGCGCATCGACCTCGCGCCGGGCGGCATGGCGCCGCC
GCACTCCCACCCGCGCGCGTCGGAGGCGGCGCTCGTCCTCAGCGGGAGCGTCCTGGTCGG
GTTCGCCGACACGTCGTACCGGCTGTACACCCAGCTGCTGCGCGCCGGCGAGGCGTTCGT
GTTCCCGAGGGCCATGGTGCACTTCCTGTACAACATGGACACGGCAGCGCCGGCCGTCGT
GCTGTCCGGGCTCAACAGCCAGAGCCCCGGCGCGCAGCTCGTGCCCTTCTCGGCGTTCCG
GACGGAGCCGCGGCTGCCGGACGAGGTCCTCAAGAAGGCGTTCAAGATCACCGGCCAGGA
CGTGCAGAGGATCCAAAAACACCTCGGTGGACTATGATCGATTCGAGATTCTACCCATCA
GATTTTAGGCACAAACATATGATATGAGTTGGATCCAATATTGAAACCACTGGAGGATAT
TCTTTGATGCTGAATTTGTTAACACATGCTGAAAGTTTTGTCAACGTGATTCATGATTGT
ATAATATGTGAAGTGCAATATC