Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0177300-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:4090005:4093914:1 gene:Os03g0177300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0177300-01)
Sequence

ATGTCGGCGCGCGACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGAC
GGGGCGGTGCTCGGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTC
GCCGCGTCCGGGCAGCTGCGGCGCATCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTC
CGCTCGCTCCTCGCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCG
GTGGTGCGGGGCCACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCC
GGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGC
ATCTTTGGGTGGACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATT
ATAACATCATTTAGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATG
GTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAA
CTTACCCCAGTCGACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTAC
CCAATTGCGTTGTTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATA
GGCTATATTCGACCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTT
TTCTTGTCTGACCTTACCAAGGATGAGATGGAAGCCGAGTTGTCTTCTCGTGCTAAAACA
CTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACT
TACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCCAAGAGGTATTT
CGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATG
GGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCT
TGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCA
TTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGA

Peptide Sequence

PEP ID

Os03t0177300-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:4090005:4093914:1 gene:Os03g0177300 transcript:Os03t0177300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0177300-01)
Sequence

MSARDRETAVALARLAAALDGAVLGLGTAALAVASWVKYLAASGQLRRIASAPAAAIPDL
RSLLAEYGGGGGDGDQPILAVVRGHVRAAPRGKYLVPPGSGEHCVVAKHTQLCLFNEWRG
IFGWTFDLHALFFKSIKEQIITSFRWVPFVLVDPENMTGMVHVKLDRAMQPLPLTTVYHK
LTPVDSTPYTLFQTIIGNGYPIALLDEEKILPVGKEITAIGYIRPHKASVEISSCSEIPF
FLSDLTKDEMEAELSSRAKTLFWASVVLGTMSVCLLGFATYRSWKKIKERREARQAQEVF
RQTTDEVTDDQSSDEEAGEMGDGQLCVICLRKRRKAAFIPCGHLVCCCKCALIVERQFDP
LCPMCRQDIRYMIRIYDN

Transcript Sequence

Transcript ID

Os03t0177300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:4090005:4093914:1 gene:Os03g0177300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0177300-01)
Sequence

GGCCCCAAATCGGCAAAATCGCCACCGCACACAGGAGAGGACACAGCGACGAAAGCAGCG
AAGTCGGCGGCGCGTCGCGCCCCCACCGCATCGATCGCCTCGCCCCGGTGAGCCATGTCG
GCGCGCGACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCG
GTGCTCGGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTCGCCGCG
TCCGGGCAGCTGCGGCGCATCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTCCGCTCG
CTCCTCGCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTG
CGGGGCCACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAG
CACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTT
GGGTGGACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACA
TCATTTAGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCAT
GTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACC
CCAGTCGACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATT
GCGTTGTTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTAT
ATTCGACCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTG
TCTGACCTTACCAAGGATGAGATGGAAGCCGAGTTGTCTTCTCGTGCTAAAACACTCTTT
TGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGG
AGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCCAAGAGGTATTTCGACAA
ACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGAC
GGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGT
CACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGC
CCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTG
ATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAG
ACCTCAACTGATCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTA
CCCTGAATTTTGTGTATATATATGACGTGTTAGTCACTCCCAGGAGAACTCATATGGGCA
GAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAG
TCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCT
TCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGCAAAAGTATGATGGTTCGG
ATTTTT