Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0176800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:4073587:4077624:-1 gene:Os03g0176800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA92 description:Domain of unknown function DUF1618 domain containing protein. (Os03t0176800-01)
Sequence

ATGAGCCCGTGCAACTACTTCGTCTACACCGCTGGCCCCGGGCGTCCATGGCTCGACCTG
CTTCCTGACCCCAATGCCATGCCCTTCAACTCCCAGCAATTTGGCCTCTTCCCTTGCCGC
AGCGGCGTCAGTGAGCACTATGATGTGGCCTTCCTCAATTCTGAATGGGTGGCCTCTGAT
GAGGCTTGCCAGTTCGAGCTATGCACCTTCTCATCCAAGACCGGAAGGTGGAGCAGCAAA
CCAGTCTTGCTGGACTTGTCCCCGTCTGAGATTCACAAGGTAGCGATCGAGCATGAGACC
GACAAGCTGATCACCATTGGACACGATTCGTTGGGTTTGGTCGATCTCTGGCGTGGTATT
ATTCTGCTCGAAAAGCTGTTCGACGACTACCCGGTTATGAGATATATGACATTCCCTAAG
CCAGTGGTGTACACCATAGATGCGTACGGTGCAACTGTATGCGGTGAAATAGCCCCAGAG
TGTGCTCGGGATGTCGCCTGCTGCGATGGTTTGATCAAGTTTGTGGACATAGAATACTGC
TACAGTGACGACGTCAATGGTAATGGTTGGAAAGCCACGATATGGAATAGGATGCTTTCT
TGGAAAGATTGGCGCAAGCGTTTCTCAGTTGACAAATTTGACATCTTGGTTGATCCCAGT
TACTCCACTGTTTTGCCCGATCTATGGGACGATAATACCAAAATGATGCAATTGAAGAAA
CTGATTTGTACTATCCCCACTCTGAGCATGTATGACGACGATTTTGTTTACATGATGTCC
ACGATGACTGAAGAAGACAAAAATGCCTGGATCATCTCTGTTGACATGAAACAGAACACT
CTGCAAGCTGTGGCCCCAATTTCTGCTGAAAGGTTCTCCGTTCTCTGTTCAGATTGTCGT
CCCTGTGCATTCTCCAAGTACCTCAAGATTACCTCAGGGGTTGTCATTCCCAATCCTGTG
GGCGAGTACACCAAGAGAAATCATCTTCAGGACCGTGTTCTGGAAGCGCTACGGACTCAA
GACTCGTTGAATGAACTTGACGATTGCTCAGAATTTGAGAGGTCAAACTTCGAGGAGTAC
AGGTCACTCGTTCAGTCCAGTCCAGTATCATCTCTGCATTCCAATATTCAGAATGTTGCT
GGATATTATGCTTCTAATGATATTGAGAAAGCGGCCTCCAAAGCTGTGAATATTTGCTTA
CGAGCTTCGGAAGACCTGAATCAGGTATTACAAGAGTCAACCAGTTATCCGTCAGCACAT
GCTGAAGCCATCAGGAGCAAAATCAATGTTGTCCTTAGAGCCATAGGCAGCCTCGTGCAA
ACTGTGCCAGTGCAACCAAGAATGACGACGGTTGCTGATTCCCACGGCGTTTCGAAGATT
TATAGCGAAGAAGAGAAAAACAACTCTCACGAACCATAA

Peptide Sequence

PEP ID

Os03t0176800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:4073587:4077624:-1 gene:Os03g0176800 transcript:Os03t0176800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA92 description:Domain of unknown function DUF1618 domain containing protein. (Os03t0176800-01)
Sequence

MSPCNYFVYTAGPGRPWLDLLPDPNAMPFNSQQFGLFPCRSGVSEHYDVAFLNSEWVASD
EACQFELCTFSSKTGRWSSKPVLLDLSPSEIHKVAIEHETDKLITIGHDSLGLVDLWRGI
ILLEKLFDDYPVMRYMTFPKPVVYTIDAYGATVCGEIAPECARDVACCDGLIKFVDIEYC
YSDDVNGNGWKATIWNRMLSWKDWRKRFSVDKFDILVDPSYSTVLPDLWDDNTKMMQLKK
LICTIPTLSMYDDDFVYMMSTMTEEDKNAWIISVDMKQNTLQAVAPISAERFSVLCSDCR
PCAFSKYLKITSGVVIPNPVGEYTKRNHLQDRVLEALRTQDSLNELDDCSEFERSNFEEY
RSLVQSSPVSSLHSNIQNVAGYYASNDIEKAASKAVNICLRASEDLNQVLQESTSYPSAH
AEAIRSKINVVLRAIGSLVQTVPVQPRMTTVADSHGVSKIYSEEEKNNSHEP

Transcript Sequence

Transcript ID

Os03t0176800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:4073587:4077624:-1 gene:Os03g0176800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA92 description:Domain of unknown function DUF1618 domain containing protein. (Os03t0176800-01)
Sequence

GATTTGCCCCGTTTCGTACCGTACACCCACGCTGGTGAATCCATACGCCGCTGGCCCCGG
CGCCGCCTCCCGACGCTCTGGCTCTCCCGACTGGGTCATGCTGGATAAAACAGCGTACAT
CTCCGACCGCCGGAACGCGTCCACGGCTGAATCCCAGACGAGCGAGGGCCAGATCGTCCA
GGTGTCCTTCTGACTCGTCGATCCGCCGGGTTATTCCTACTTCACCGTCCATTGCCCGGG
ACTGAAGGGGGGGACGGCTTCTCCGACGAGCCCTCCGTTCTCGCCGCGGAAGGATCCCTC
GTTCTCTTCCGCGTCAATTTGTCCCCGCGTCCCAGGAGGTCTGGCACCTACATGAGCCCG
TGCAACTACTTCGTCTACACCGCTGGCCCCGGGCGTCCATGGCTCGACCTGCTTCCTGAC
CCCAATGCCATGCCCTTCAACTCCCAGCAATTTGGCCTCTTCCCTTGCCGCAGCGGCGTC
AGTGAGCACTATGATGTGGCCTTCCTCAATTCTGAATGGGTGGCCTCTGATGAGGCTTGC
CAGTTCGAGCTATGCACCTTCTCATCCAAGACCGGAAGGTGGAGCAGCAAACCAGTCTTG
CTGGACTTGTCCCCGTCTGAGATTCACAAGGTAGCGATCGAGCATGAGACCGACAAGCTG
ATCACCATTGGACACGATTCGTTGGGTTTGGTCGATCTCTGGCGTGGTATTATTCTGCTC
GAAAAGCTGTTCGACGACTACCCGGTTATGAGATATATGACATTCCCTAAGCCAGTGGTG
TACACCATAGATGCGTACGGTGCAACTGTATGCGGTGAAATAGCCCCAGAGTGTGCTCGG
GATGTCGCCTGCTGCGATGGTTTGATCAAGTTTGTGGACATAGAATACTGCTACAGTGAC
GACGTCAATGGTAATGGTTGGAAAGCCACGATATGGAATAGGATGCTTTCTTGGAAAGAT
TGGCGCAAGCGTTTCTCAGTTGACAAATTTGACATCTTGGTTGATCCCAGTTACTCCACT
GTTTTGCCCGATCTATGGGACGATAATACCAAAATGATGCAATTGAAGAAACTGATTTGT
ACTATCCCCACTCTGAGCATGTATGACGACGATTTTGTTTACATGATGTCCACGATGACT
GAAGAAGACAAAAATGCCTGGATCATCTCTGTTGACATGAAACAGAACACTCTGCAAGCT
GTGGCCCCAATTTCTGCTGAAAGGTTCTCCGTTCTCTGTTCAGATTGTCGTCCCTGTGCA
TTCTCCAAGTACCTCAAGATTACCTCAGGGGTTGTCATTCCCAATCCTGTGGGCGAGTAC
ACCAAGAGAAATCATCTTCAGGACCGTGTTCTGGAAGCGCTACGGACTCAAGACTCGTTG
AATGAACTTGACGATTGCTCAGAATTTGAGAGGTCAAACTTCGAGGAGTACAGGTCACTC
GTTCAGTCCAGTCCAGTATCATCTCTGCATTCCAATATTCAGAATGTTGCTGGATATTAT
GCTTCTAATGATATTGAGAAAGCGGCCTCCAAAGCTGTGAATATTTGCTTACGAGCTTCG
GAAGACCTGAATCAGGTATTACAAGAGTCAACCAGTTATCCGTCAGCACATGCTGAAGCC
ATCAGGAGCAAAATCAATGTTGTCCTTAGAGCCATAGGCAGCCTCGTGCAAACTGTGCCA
GTGCAACCAAGAATGACGACGGTTGCTGATTCCCACGGCGTTTCGAAGATTTATAGCGAA
GAAGAGAAAAACAACTCTCACGAACCATAAACTGGATAGTGGTAACACACTACACAGGCC
CCACGTGGCGTAAGTATGGGGCTGTTTGGATAGCTTACCCACTTTGCCATACTTATTTGC
ATGTGGTACACCATAGTTTCTTGGCAACCAAAAAAGAGCCATACGCCCATACTTGTGACA
AGCTTTTATACTAACGAGTGCATAACATATGGACCATAAGAGTAGGAAAGTGTATCATAT
GCCATATCTTTAGCTTCACTCAAACCCTCACACTAAAAATTTAAACTTGTC