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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0175800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:4038341:4039509:-1 gene:Os03g0175800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BIG GRAIN1 description:Positive regulator of auxin response and transport, Regulation of grain size (Os03t0175800-01)
Sequence

ATGGAGAGGTGGGCGGCGCCCAAGGTGACGGCTGGTTCGGCGAGGCGGTACGTCGCCGAC
CAGCCGTCTTTCTCATCCACGCTGCTCGACGCGATATACAAGTCGATGGACGAGCAGCCG
GGTCACGGCGGCGGCGCCACCGGGGTGGAGGCGGTGGCTGCGGCGGCCAAGAAGCAGCAC
GAGGCGGCCCTGCACTATGGGAACTACTACAAGCCGTCGCTCGCGGGGAGCTACCGGGCG
CGCGCGCCGGGTCCGCACGCCACGACGTCGAGCTCGTCGGAGTGTTCTAGCTACGGCGGG
TTCTCGTCGTCCGAGGCGGAGTCGTCGCACCACCGACGCCTCCGCCCCATCCGCACGACT
GTCCCCGGTGGTGCGCCGGGGCCCGCGCCGGAGAAGAAGGCCAAGAAGCCCGGGGCCTCC
ATACGCGCCAAGCTCAGGGACCTCCGCAAGCCGGCTTCCCCCGGCGCGCGCCTCGCGGGC
TTCCTCAACTCCATCTTCGCCGGCAAGCGCGCGCCGGCCACGCCGCCCTCGGCGACGGCC
GGGGCGGAGTCCGCGTGCTCGACGGCGTCGTCCTACTCCCGCTCCTGCCTGAGCAAGACG
CCGTCGACGCGCGGGCAGGCGAAGCGGACCGTGCGGTTCTTGGACAGCGACACGGAGTCC
CTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGGTGCCCGTGGAGGCGGTGCAGCAGATG
CTGCTCCAGCGGATGGAGATGGAGAGCGACGAGGACGACGACGAGAGCAGCGACGCGAGC
TCCGACCTGTTCGAGCTCGAGAACTTCGCCGCCATTGCTCCCGCCGGGGCCGCGTACCGG
GACGAGCTGCCGGTGTACGAGACGACCAGAGTGGCGCTGAACCGCGCCATTGGCCATGGG
TATGGCCATGGACGGAGCGCCAGAGTTGTCTGA

Peptide Sequence

PEP ID

Os03t0175800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:4038341:4039509:-1 gene:Os03g0175800 transcript:Os03t0175800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BIG GRAIN1 description:Positive regulator of auxin response and transport, Regulation of grain size (Os03t0175800-01)
Sequence

MERWAAPKVTAGSARRYVADQPSFSSTLLDAIYKSMDEQPGHGGGATGVEAVAAAAKKQH
EAALHYGNYYKPSLAGSYRARAPGPHATTSSSSECSSYGGFSSSEAESSHHRRLRPIRTT
VPGGAPGPAPEKKAKKPGASIRAKLRDLRKPASPGARLAGFLNSIFAGKRAPATPPSATA
GAESACSTASSYSRSCLSKTPSTRGQAKRTVRFLDSDTESLASSTVVDRRRVPVEAVQQM
LLQRMEMESDEDDDESSDASSDLFELENFAAIAPAGAAYRDELPVYETTRVALNRAIGHG
YGHGRSARVV

Transcript Sequence

Transcript ID

Os03t0175800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:4038341:4039509:-1 gene:Os03g0175800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BIG GRAIN1 description:Positive regulator of auxin response and transport, Regulation of grain size (Os03t0175800-01)
Sequence

CTTCTCTCCTCCACCTTTCCCCAACACGTACCACCAACTCACCGCGTACCAAGCCACCGG
CTCAGCAGCAGCAGCTGCCATTTCACAGAGGCATTGGTTGCTGCTCTCTCTTCTTGGCGT
TTGTTTCCTATGGAGAGGTGGGCGGCGCCCAAGGTGACGGCTGGTTCGGCGAGGCGGTAC
GTCGCCGACCAGCCGTCTTTCTCATCCACGCTGCTCGACGCGATATACAAGTCGATGGAC
GAGCAGCCGGGTCACGGCGGCGGCGCCACCGGGGTGGAGGCGGTGGCTGCGGCGGCCAAG
AAGCAGCACGAGGCGGCCCTGCACTATGGGAACTACTACAAGCCGTCGCTCGCGGGGAGC
TACCGGGCGCGCGCGCCGGGTCCGCACGCCACGACGTCGAGCTCGTCGGAGTGTTCTAGC
TACGGCGGGTTCTCGTCGTCCGAGGCGGAGTCGTCGCACCACCGACGCCTCCGCCCCATC
CGCACGACTGTCCCCGGTGGTGCGCCGGGGCCCGCGCCGGAGAAGAAGGCCAAGAAGCCC
GGGGCCTCCATACGCGCCAAGCTCAGGGACCTCCGCAAGCCGGCTTCCCCCGGCGCGCGC
CTCGCGGGCTTCCTCAACTCCATCTTCGCCGGCAAGCGCGCGCCGGCCACGCCGCCCTCG
GCGACGGCCGGGGCGGAGTCCGCGTGCTCGACGGCGTCGTCCTACTCCCGCTCCTGCCTG
AGCAAGACGCCGTCGACGCGCGGGCAGGCGAAGCGGACCGTGCGGTTCTTGGACAGCGAC
ACGGAGTCCCTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGGTGCCCGTGGAGGCGGTG
CAGCAGATGCTGCTCCAGCGGATGGAGATGGAGAGCGACGAGGACGACGACGAGAGCAGC
GACGCGAGCTCCGACCTGTTCGAGCTCGAGAACTTCGCCGCCATTGCTCCCGCCGGGGCC
GCGTACCGGGACGAGCTGCCGGTGTACGAGACGACCAGAGTGGCGCTGAACCGCGCCATT
GGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTCTGAATATCTTAGTTGGAATCA
ACCGGGCGAGAGGGGTAACTGTAAAATGGCGGTGTAGTTACTGTAAAATGCAATTAGTTT
GGGATAAGTGTTCTTCCCTTTCTTTTTTG