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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0174900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:4002089:4005420:-1 gene:Os03g0174900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX description:Similar to RAPB protein. (Os03t0174900-01)
Sequence

ATGCAAAGTTTGTTTGCATCTACACTACTGAAGTTATGTGACATTTCTTTTCTTCTTGTA
CTAATGCTAGGTAATCTTGATGGTTACACGAAGAGTGATGAAGGTAAGATGATGTCAGCT
TTATCTCTGGGCAAATCAGAAACTGTGTATGCACATTCGGAACCTGACCGTAGCCAACCC
TTTGGCATATCATATCCATATGCTGATTCGTTCTATGGTGGTGCTGTAGCGACTTATGGC
ACACATGCTATTATGCATCCCCAGATTGTGGGCGTGATGTCATCCTCCCGAGTCCCGCTA
CCAATAGAACCAGCCACCGAAGAGCCTATTTATGTAAATGCAAAGCAATACCATGCGATT
CTCCGAAGGAGACAGCTCCGTGCAAAGTTAGAGGCTGAAAACAAGCTGGTGAAAAACCGC
AAGCCGTACCTCCATGAATCCCGGCATCAACACGCGATGAAGAGAGCTCGGGGAACAGGG
GGGAGATTCCTCAACACAAAGCAGCAGCCTGAAGCTTCAGATGGTGGCACCCCAAGGCTC
GTCTCTGCAAACGGCGTTGTGTTCTCAAAGCACGAGCACAGCTTGTCGTCCAGTGATCTC
CATCATCGTCGTGCGAAAGAGGGCGCTTGA

Peptide Sequence

PEP ID

Os03t0174900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:4002089:4005420:-1 gene:Os03g0174900 transcript:Os03t0174900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX description:Similar to RAPB protein. (Os03t0174900-01)
Sequence

MQSLFASTLLKLCDISFLLVLMLGNLDGYTKSDEGKMMSALSLGKSETVYAHSEPDRSQP
FGISYPYADSFYGGAVATYGTHAIMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAI
LRRRQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLNTKQQPEASDGGTPRL
VSANGVVFSKHEHSLSSSDLHHRRAKEGA

Transcript Sequence

Transcript ID

Os03t0174900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:4002089:4005420:-1 gene:Os03g0174900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX description:Similar to RAPB protein. (Os03t0174900-01)
Sequence

GAGAGAGAGAAGGAGAGGGGCTTTGCACTTGCAGAGGAGAGAAGCAAGGTGAGAAGTGAG
GAGGCAGCAAGGGAGGAGGTTTGCCGGAGAGGGGACATGCTCCCTCCTCATCTCACAGAA
AATGGCACAGTAATGATTCAGTTTGGTCATAAAATGCCTGACTACGAGTCATCAGCTACC
CAATCAACTAGTGGATCTCCTCGTGAAGTGTCTGGAATGAGCGAAGGAAGCCTCAATGAG
CAGAATGATCAATCTGGTTTGGACTAGACACACCATATGCATTTTTTGTATCAGTAAATA
ATATTGCAATACAGCACCTCCAGGGTAAAAGGAATATTGATGGATGCAAAGTTTGTTTGC
ATCTACACTACTGAAGTTATGTGACATTTCTTTTCTTCTTGTACTAATGCTAGGTAATCT
TGATGGTTACACGAAGAGTGATGAAGGTAAGATGATGTCAGCTTTATCTCTGGGCAAATC
AGAAACTGTGTATGCACATTCGGAACCTGACCGTAGCCAACCCTTTGGCATATCATATCC
ATATGCTGATTCGTTCTATGGTGGTGCTGTAGCGACTTATGGCACACATGCTATTATGCA
TCCCCAGATTGTGGGCGTGATGTCATCCTCCCGAGTCCCGCTACCAATAGAACCAGCCAC
CGAAGAGCCTATTTATGTAAATGCAAAGCAATACCATGCGATTCTCCGAAGGAGACAGCT
CCGTGCAAAGTTAGAGGCTGAAAACAAGCTGGTGAAAAACCGCAAGCCGTACCTCCATGA
ATCCCGGCATCAACACGCGATGAAGAGAGCTCGGGGAACAGGGGGGAGATTCCTCAACAC
AAAGCAGCAGCCTGAAGCTTCAGATGGTGGCACCCCAAGGCTCGTCTCTGCAAACGGCGT
TGTGTTCTCAAAGCACGAGCACAGCTTGTCGTCCAGTGATCTCCATCATCGTCGTGCGAA
AGAGGGCGCTTGAGATCCTCGCCGTTTCTGTCATGGCAAATCATCCTTGGCTTATGTGTG
GTGCCCAGCAAAAAAAAATCTGACTGAACCTGTGTGTAAACTGATGGGTATGGGTGGGTT
TTGTGCAACTGTAACTAGGGTGCTTGACATCTGTGTCTGTTGTTCCTCTGCCTCCTTAGT
TTGGAGACGGTGCAGCTGCAGCTGGTACCAGTAATCTGATCATGCTAGACTTGTGACAAG
GACAAAACTAGCACCCCGTTATGTTTCCTGGCTTCTGAATTTGGTGGTCATTCAG