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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0173900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:3961041:3966305:1 gene:Os03g0173900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0173900-01)
Sequence

ATGAACGGGAGTCGGCAGATGGAGCTGCACTACATAAATACTGGATTTCCATACACCATC
ACCGAGAGCTTCATGGATTTCTTTGAGGGCCTCACATATGCTCATGCTGATTTTGCTATT
GCAGATGCTTTCCATGATCAGGCTAATCCATACTGGGCAATGATGCATACAAACTCGTAC
AAGTATGGATATTCCGGTGCAGGAAATTATTACAGTTATGGGCATGTTTATGATATGAAT
GATTACATGCATAGGGCAGATGGTGGACGCAGAATCTGGGATAATGCTACACCTGTAAAC
AACACTGAATCCCCAAATGTAGTCTTGCAGGGTGGAGAAACTCCTCATGCAAATACAAGC
TCTACTACTGAGGAATGTATCCAACAACAAGTACACCAGAATTCGAGCAGTCCACAGGTC
ATTTGGCAAGACAACATTGATCCTGACAATATGACATATGAGGAATTGTTGGATTTGGGT
GAGGCAGTTGGAACCCAAAGCCGTGGTCTCTCCCAAGAACGCATTTCATTACTTCCAGTC
ACCAAGTACAAATGTGGTTTCTTTTCAAGGAAGAAAACACGCCGTGAAAGGTGTGTAATT
TGCCAAATGGAGTACAGGAGAGGGAATCTGCAGATGACGCTTCCCTGCAAGCATGTGTAC
CATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCT
GAGGTTCCTGGTGACGAACCCAAGAGGCAATGA

Peptide Sequence

PEP ID

Os03t0173900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:3961041:3966305:1 gene:Os03g0173900 transcript:Os03t0173900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0173900-01)
Sequence

MNGSRQMELHYINTGFPYTITESFMDFFEGLTYAHADFAIADAFHDQANPYWAMMHTNSY
KYGYSGAGNYYSYGHVYDMNDYMHRADGGRRIWDNATPVNNTESPNVVLQGGETPHANTS
STTEECIQQQVHQNSSSPQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQERISLLPV
TKYKCGFFSRKKTRRERCVICQMEYRRGNLQMTLPCKHVYHASCVTRWLSINKVCPVCFA
EVPGDEPKRQ

Transcript Sequence

Transcript ID

Os03t0173900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:3961041:3966305:1 gene:Os03g0173900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0173900-01)
Sequence

ACCGCCACCTTAGCCGCGCGAGGCATTGCCCTCCTCCTGCGCGGCCGCCCCCCACGACCG
CGGCGGAGGCTGCTCCGGCTGGGGCGGGATCGACGACGACTGATTCGGTTCATGATCCAT
CAGAAGGAATGAACGGGAGTCGGCAGATGGAGCTGCACTACATAAATACTGGATTTCCAT
ACACCATCACCGAGAGCTTCATGGATTTCTTTGAGGGCCTCACATATGCTCATGCTGATT
TTGCTATTGCAGATGCTTTCCATGATCAGGCTAATCCATACTGGGCAATGATGCATACAA
ACTCGTACAAGTATGGATATTCCGGTGCAGGAAATTATTACAGTTATGGGCATGTTTATG
ATATGAATGATTACATGCATAGGGCAGATGGTGGACGCAGAATCTGGGATAATGCTACAC
CTGTAAACAACACTGAATCCCCAAATGTAGTCTTGCAGGGTGGAGAAACTCCTCATGCAA
ATACAAGCTCTACTACTGAGGAATGTATCCAACAACAAGTACACCAGAATTCGAGCAGTC
CACAGGTCATTTGGCAAGACAACATTGATCCTGACAATATGACATATGAGGAATTGTTGG
ATTTGGGTGAGGCAGTTGGAACCCAAAGCCGTGGTCTCTCCCAAGAACGCATTTCATTAC
TTCCAGTCACCAAGTACAAATGTGGTTTCTTTTCAAGGAAGAAAACACGCCGTGAAAGGT
GTGTAATTTGCCAAATGGAGTACAGGAGAGGGAATCTGCAGATGACGCTTCCCTGCAAGC
ATGTGTACCATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTT
GCTTTGCTGAGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGT
TCTTGCGCCCAGACTCAGCCCACACTGTACCCCAACGGATGCATGATTTCTGCTTGAAGG
CAGCTTTCCCCTTTCTCTCTAGATTTGTGTATTAGAATCATATCGCAAATATAGGTTATA
ACCAGATGTAGTTGGATCTTGGAACCTGTTCTGAGAGGTTTGCCGTAGACTGTAGAGTTC
GAATGTGAAGTGTAACCCTGTGCTAGATGAAGCATGCTGGATCACGCGCGCTTGCGAGGT
GTTTTTGTCCACTGCAAAGAGCATTGCACTAGCCTGTGTTATTTGAATTCAATTAAGATT
TTGTGGACAGAAAAAATTCATTTGTTACATCCCCTGCTTTTAGCCTGTCAATCACAGTAT
GTCCCCTGTTTTTCCCATG