Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0162900-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:3407989:3413958:1 gene:Os03g0162900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0162900-01)
Sequence	ATGATGAGCCCGTGCGATTGCTTCCTCCATGCCACCGCGCCGCCGCTGAATCCGCCGTCG AGTCTCGCGGCTGCGGCGCCGGGAGCTCGCTGGAGGGATAGCAACCTCTCGTTCCAGAGC AGCGCAGTGTCTGCGCCGGCGAGAAACGTCGAGACTTCCCCCAATTTGGTGGTTCCATGT ACGGTTCATACGCAGGCTGCTGAAAGGAAGAAGAGTGGGAGGTGGGTGAAGTATGGCGGG TCGATTCCGGCGATGCTGGAGGCGCTTGAGCGTAATGAGGATATCGGGGAGGCGCTCCGG CCATGGAGGGACACGATGAGCAACCGGGAGAGGACAATCATTCTCAAGGAGCAGAAGGAT TGGAGGAGAGCGGTTGAAATTTTCAACTGGTTTCGCAGGAGGAGGCGCCATGAGGTCAAT GTGATACACTACAATGTTGTTCTCTGCGCGGTTGGGAGGGCGAGGAGATGGGACCTTGTT GCTAGGCTATGGCATGAGATGCATTCCGGTGGTGTTGCGCCGGATAATTCGACGTATGGC ACGCTTATTGATGTGCACTGCAAAGGGGGCAGAGAGAGGATGGCATTGCTTTGGCTTGGC GACATGATCAAGCGTGGGTTGCTGCCTGATGAGATTACTATGAGTATTGTGCTTCAGGTA CACAAGAAGGCTGGGGAGTATGAGAAAGCCGAGCTTTTCTTCAAGAGATGGTCCTTGGAG TCAGATGTAAAGATGAAAGGGCATCCTTGCTATAGTTTGTATACTTACAACACCTTGATC GATACTTATGGAAAGGCTGGGCAACTTGAGAAAGTATCAGATACATTCAATCAGATGTTA AGAGAAGGTGTTTCACCAAATGTTGTTACATTTAACACAATGATTCATGTTTGGGGTAAA CACCGTAGAATGGAGCAAGTAGCTTCTCTGATGAGAACGATGGAGGAGTTTCAGTGCCTT CCGGACACTAGGACGTATAATATTCTGATCTCGCTATACAGAGAAATCAATGATATTGAT GTTGCGGAGTACTATTTCAGGAAGATGAAAGCTGAAAATCTGCTTCCAGATGTTGTGAGC TGCCGCACTCTCTTGTATGGATACTCTATCAAGGGCATGGTCACTGAAGCACAAGCTCTT CTTAAAGAAATGTATGAGAGGAACATGGTGATTGATGAATACACACAATCAGCTGTGACG AGGATGTATGTCGATGCTGGGATGCTTGAGCAAGCGTGGTGTTGGTTTGAGAAGTTCAAT TATCAGTTAAACTCTGAGTGCTTTTCTGCAAATATTGATGCATTTGGGGAGAGAGGGCAT ATACTCCTTGCAGAGAAGGCTTTTATGTGCTGCATAAAAAGGAAGATGCTAAGCACTTGT GTTTGTAATGTTATGATCAAAGCATATGGTTTAGTAGAGAAGCTTGACGAGGCTTGTGAG ATTGCTGATGGCATGGAGAGGTATGGCATTTTGCCTGATTACTTGACTTACAGTTCTCTG ATTCATCTAATGTCAACCGCTAAATTGCCAGAGAAAGCTCTTTACTATTTGAGAAAGATG CAGGCAGCAAAATTGCTGATTGATTGTGTTCCTTATTCTGTGGTAATCAGTTGCTTTGCT AAGAATGGCAATTTACACATGGTCGACTGCCTGTTTAGAGAAATGATCACTTCAGGGATC CAAGCTGATACTTATGTTTACTCTATCTTAATTGATGCATATGCTGAAGTTGGAGATGTC CAGAAAGCTGAAGCATATTTTGGTTTGTTGAAAAAGGCTGGTTTATGTGAGAGTGCTACA ATATATAATTCTTTGATAAAGCTCTACACAAAGGTAGTGTATCTTGCAGAGGCACAGAAA ACGTACAAGCTTCTCAAATCATTAAATGCAGACACCAACCTTTATGCGTCAAACTGCATG ATTGACCTCTATAGTGACCATTGTATGGTGAAGGAAGCACGTGAGATTTTTGAGAATTTG AAGGTTACAGGAAAGGCAAATGAATTTTCACATGCAATGATGGTGTGCTTGTACAAGAAA ATTGCTCGCTTTGATGAAGCCCACAGGATTTCTAAGAAAATGCAAGCTTCAGGATTTCTA ACTCAGGCATTAAGCTACAACTCTGTGATACAAATGTATGTGTCTGGTGGAAGAATGGAA GATGCCCTTAAAATATTTCAGAAGATGTTGGCATCGAACACACCACCAAATGATGCAACA TTCAAGGCACTAAAGATTATTTTAGTGAAACGAGGAGTTTCAAATAATGATATTAGAAGG TTAGAATTGCTCAGAAAAAATAGAATTCATGATTGCTTGCGCCACTGGTACAGGATGCTA TGCATGGCGGTAAGATCAGGTGGTAGTTCTTCTCGACGTATTAGTGATAATTCAGCTCTG AGGACGCATATTTTTGACATTGGCAATTCCAAGAGTGGCAAAAGAAATACAAGAAAGCAT GTAACTTCATAA

Peptide Sequence

PEP ID	Os03t0162900-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:3407989:3413958:1 gene:Os03g0162900 transcript:Os03t0162900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0162900-01)
Sequence	MMSPCDCFLHATAPPLNPPSSLAAAAPGARWRDSNLSFQSSAVSAPARNVETSPNLVVPC TVHTQAAERKKSGRWVKYGGSIPAMLEALERNEDIGEALRPWRDTMSNRERTIILKEQKD WRRAVEIFNWFRRRRRHEVNVIHYNVVLCAVGRARRWDLVARLWHEMHSGGVAPDNSTYG TLIDVHCKGGRERMALLWLGDMIKRGLLPDEITMSIVLQVHKKAGEYEKAELFFKRWSLE SDVKMKGHPCYSLYTYNTLIDTYGKAGQLEKVSDTFNQMLREGVSPNVVTFNTMIHVWGK HRRMEQVASLMRTMEEFQCLPDTRTYNILISLYREINDIDVAEYYFRKMKAENLLPDVVS CRTLLYGYSIKGMVTEAQALLKEMYERNMVIDEYTQSAVTRMYVDAGMLEQAWCWFEKFN YQLNSECFSANIDAFGERGHILLAEKAFMCCIKRKMLSTCVCNVMIKAYGLVEKLDEACE IADGMERYGILPDYLTYSSLIHLMSTAKLPEKALYYLRKMQAAKLLIDCVPYSVVISCFA KNGNLHMVDCLFREMITSGIQADTYVYSILIDAYAEVGDVQKAEAYFGLLKKAGLCESAT IYNSLIKLYTKVVYLAEAQKTYKLLKSLNADTNLYASNCMIDLYSDHCMVKEAREIFENL KVTGKANEFSHAMMVCLYKKIARFDEAHRISKKMQASGFLTQALSYNSVIQMYVSGGRME DALKIFQKMLASNTPPNDATFKALKIILVKRGVSNNDIRRLELLRKNRIHDCLRHWYRML CMAVRSGGSSSRRISDNSALRTHIFDIGNSKSGKRNTRKHVTS

Transcript Sequence

Transcript ID	Os03t0162900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:3407989:3413958:1 gene:Os03g0162900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0162900-01)
Sequence	GTTCCGGAGCGCCGGCCGCCGCCTCCGCCGCGACGACCTCACTTTCTGCTATCAACCTGT AGCAAACCAGGAGCAGCGTCGGCCTCCTCCTCCGCCTCCGAGCTGTGTCGTTCTCCGGAT TGAGCCGGGAGTAGCCGTGGAAGCTGAGGCCGAGGTGCATTTGTGGTTTTCTTGGCGCGG ATAAAGGCTGGGGGTGGGGAGATGATGAGCCCGTGCGATTGCTTCCTCCATGCCACCGCG CCGCCGCTGAATCCGCCGTCGAGTCTCGCGGCTGCGGCGCCGGGAGCTCGCTGGAGGGAT AGCAACCTCTCGTTCCAGAGCAGCGCAGTGTCTGCGCCGGCGAGAAACGTCGAGACTTCC CCCAATTTGGTGGTTCCATGTACGGTTCATACGCAGGCTGCTGAAAGGAAGAAGAGTGGG AGGTGGGTGAAGTATGGCGGGTCGATTCCGGCGATGCTGGAGGCGCTTGAGCGTAATGAG GATATCGGGGAGGCGCTCCGGCCATGGAGGGACACGATGAGCAACCGGGAGAGGACAATC ATTCTCAAGGAGCAGAAGGATTGGAGGAGAGCGGTTGAAATTTTCAACTGGTTTCGCAGG AGGAGGCGCCATGAGGTCAATGTGATACACTACAATGTTGTTCTCTGCGCGGTTGGGAGG GCGAGGAGATGGGACCTTGTTGCTAGGCTATGGCATGAGATGCATTCCGGTGGTGTTGCG CCGGATAATTCGACGTATGGCACGCTTATTGATGTGCACTGCAAAGGGGGCAGAGAGAGG ATGGCATTGCTTTGGCTTGGCGACATGATCAAGCGTGGGTTGCTGCCTGATGAGATTACT ATGAGTATTGTGCTTCAGGTACACAAGAAGGCTGGGGAGTATGAGAAAGCCGAGCTTTTC TTCAAGAGATGGTCCTTGGAGTCAGATGTAAAGATGAAAGGGCATCCTTGCTATAGTTTG TATACTTACAACACCTTGATCGATACTTATGGAAAGGCTGGGCAACTTGAGAAAGTATCA GATACATTCAATCAGATGTTAAGAGAAGGTGTTTCACCAAATGTTGTTACATTTAACACA ATGATTCATGTTTGGGGTAAACACCGTAGAATGGAGCAAGTAGCTTCTCTGATGAGAACG ATGGAGGAGTTTCAGTGCCTTCCGGACACTAGGACGTATAATATTCTGATCTCGCTATAC AGAGAAATCAATGATATTGATGTTGCGGAGTACTATTTCAGGAAGATGAAAGCTGAAAAT CTGCTTCCAGATGTTGTGAGCTGCCGCACTCTCTTGTATGGATACTCTATCAAGGGCATG GTCACTGAAGCACAAGCTCTTCTTAAAGAAATGTATGAGAGGAACATGGTGATTGATGAA TACACACAATCAGCTGTGACGAGGATGTATGTCGATGCTGGGATGCTTGAGCAAGCGTGG TGTTGGTTTGAGAAGTTCAATTATCAGTTAAACTCTGAGTGCTTTTCTGCAAATATTGAT GCATTTGGGGAGAGAGGGCATATACTCCTTGCAGAGAAGGCTTTTATGTGCTGCATAAAA AGGAAGATGCTAAGCACTTGTGTTTGTAATGTTATGATCAAAGCATATGGTTTAGTAGAG AAGCTTGACGAGGCTTGTGAGATTGCTGATGGCATGGAGAGGTATGGCATTTTGCCTGAT TACTTGACTTACAGTTCTCTGATTCATCTAATGTCAACCGCTAAATTGCCAGAGAAAGCT CTTTACTATTTGAGAAAGATGCAGGCAGCAAAATTGCTGATTGATTGTGTTCCTTATTCT GTGGTAATCAGTTGCTTTGCTAAGAATGGCAATTTACACATGGTCGACTGCCTGTTTAGA GAAATGATCACTTCAGGGATCCAAGCTGATACTTATGTTTACTCTATCTTAATTGATGCA TATGCTGAAGTTGGAGATGTCCAGAAAGCTGAAGCATATTTTGGTTTGTTGAAAAAGGCT GGTTTATGTGAGAGTGCTACAATATATAATTCTTTGATAAAGCTCTACACAAAGGTAGTG TATCTTGCAGAGGCACAGAAAACGTACAAGCTTCTCAAATCATTAAATGCAGACACCAAC CTTTATGCGTCAAACTGCATGATTGACCTCTATAGTGACCATTGTATGGTGAAGGAAGCA CGTGAGATTTTTGAGAATTTGAAGGTTACAGGAAAGGCAAATGAATTTTCACATGCAATG ATGGTGTGCTTGTACAAGAAAATTGCTCGCTTTGATGAAGCCCACAGGATTTCTAAGAAA ATGCAAGCTTCAGGATTTCTAACTCAGGCATTAAGCTACAACTCTGTGATACAAATGTAT GTGTCTGGTGGAAGAATGGAAGATGCCCTTAAAATATTTCAGAAGATGTTGGCATCGAAC ACACCACCAAATGATGCAACATTCAAGGCACTAAAGATTATTTTAGTGAAACGAGGAGTT TCAAATAATGATATTAGAAGGTTAGAATTGCTCAGAAAAAATAGAATTCATGATTGCTTG CGCCACTGGTACAGGATGCTATGCATGGCGGTAAGATCAGGTGGTAGTTCTTCTCGACGT ATTAGTGATAATTCAGCTCTGAGGACGCATATTTTTGACATTGGCAATTCCAAGAGTGGC AAAAGAAATACAAGAAAGCATGTAACTTCATAAATATTTCGAGTCTAACTGGTTTAACAT CTTCGATGTTGACACAACACGGTGATGATCCATCTACTAAACAGTTGATGGAAAGCACCG TGTTATCTTCAAAAGAAAACCCCATGACCACTGTTTGACTGGTGCTCTAAGAATGTGGTG AAATTTCCAATGGATCAGGCTAGATTACCGCAGGGATGCAGGATTATACTCCGGGCTAGG AGATGCTGCTGACATATGGTGTGCTCAAAGATGAGATGGGTGTGATACCTGTGATCAATG GATGATACGCATCATTGCTGGTCTGGTTCACCTCAGCTGGCTACTGAAAGCTCTGCAGCT AGCTCTGCCATCTCCCACGTCAAGCTGAGGCTGCGTTCTTTTCAGGCTAGTCGTCATCGT TTTCCGTTAGCACGCTTTTCAAACTACTAAACGGTGCATTTTTCTGTAAAAAGTTTCTAT ACGAAAGTTACTT