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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0162200-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:3371375:3372344:1 gene:Os03g0162200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Histone H2A. (Os03t0162200-01)
Sequence

ATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCC
GACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGCCGGCCTCCAG
TTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTC
GGCGCCACCGCCGCCGTGTACTCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCCTG
GAGCTGGCCGGCAACGCGAGCAAGGATCTCAAGGTGAAGCGTATCACCCCGCGCCATCTC
CAGCTAGCCATCCGCGGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGC
GGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGA

Peptide Sequence

PEP ID

Os03t0162200-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:3371375:3372344:1 gene:Os03g0162200 transcript:Os03t0162200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Histone H2A. (Os03t0162200-01)
Sequence

MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV
GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
GGVIPHIHKSLINKTSKE

Transcript Sequence

Transcript ID

Os03t0162200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:3371375:3372344:1 gene:Os03g0162200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Histone H2A. (Os03t0162200-01)
Sequence

AGCAACAGTGAGTTTGAACAGAACAACGCGACGACCCTTGCAGCGCACGACCCCGCGGAC
TCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTC
CTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCC
CCCGTCTCCCGCTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAG
CTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTACTCCGCG
GCGATTCTCGAGTACCTAACCGCCGAGGTCCTGGAGCTGGCCGGCAACGCGAGCAAGGAT
CTCAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAG
CTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAG
TCGCTCATCAACAAGACCTCCAAAGAGTGATGCGAAAAAAAAAAAACTCCCTCATGTGCT
TTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGA
TTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTT
TGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATG
CTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATC
AGTTCGATTGATTGGCATGTGCCCATGTGTTTG