Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0159700-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:3186782:3189325:1 gene:Os03g0159700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0159700-01)
Sequence

ATGGCGATCGCCGCCGCGCGCCGGCGGCTGTGGCGCGGGCTGACGACTGCGGCCGCCGCC
TCCGTAGGGGTGGAAGCGGACACCAGCGCCTTGCTCGCGCGCCTTGTCGCCGAGCCTGAG
TACCGCGTGAAGGCGACGATGGAGGAGGCGAGCGGCGGCTCCTCCGCGGCGGCCGCCTTC
TGGGAGCCCCTCGCCGCCGCCCTCCTCCGCGCGTCGTCCCCGACTAAGGCAAACCTCGTC
TTGGAATGGAAGCTAGAGAAGCTAATCAAGGAAGGGATCCGTGATTGTGAGCCCTACTCA
GTGATAATCCGTTTCTGCCGAGAGACAAAGAATGCAGAATTTGCAATGAAAGTCTTTGAA
TTCGTGGAGGAGCTTGGAATTCAGCTGAACACTGGCATTTTCAATGCCCTTATCAATGCT
TTCTTGTCGGTAGGAGATCTCCTTGCTGCAATGACCTTATATGAGGCTATGGAAGACATA
GAGGATTGCAAGCCCAACTCCGCTACATATGATGCATTCATTTCTGCATTTTCACGGCTT
GGGAGTGGCCATGCAATGATGAGCTGGTACCTGGCATCAAAGGATGCAGGATTTACTCCT
AGCATTAAGGCCTTTGAATATTTGATCACAGGTTTTGTGAAGTTGGACAGGCTAGATGAT
GCTGAAGTGGTATTTGAAGAAATGATTTGCTTTGAAATTAAGCCAAACTTTGCTATACTG
GAGGCCAAGCTTGAGCTGCTTTCAAGAAGGAAAGACCCTAACAGGGTAAAAGTATTTTTG
GAACTTGTAAGCGATGGGAATCAAGAGTTGAGTGAAGCTACAGTTGAGAGGTTAACAAGA
TTATGCCTGTACGAAGACAAAATTGGTGAACTGGACCAGTTACTTTCCCTAGTACAAGGC
ATGCACACGAGTTCTTTAACTAAGCTGCACTGTGGAATTATCAGATTCTATGCTAATGCT
GATCGCTTGTCTGATATGGAGCATGCAATTTTCCAGATGTTGGATAATGGCATGGTTTTT
GCCCACTCAGAGGATGTTGAGGCTGTTATCTGTTCTTATTTTCGTCACAAGGACTTTGAT
AGGTTGGATCTATTCTTAAACCGAATACGGAGTTTGTACAAGCTCACCCGGTCTACTTAT
GATATATTGATTTCTGGATATCAGAGGTTGAATTTACACGGAAGGCTCGACTTGGCCATA
AAAGATATGAGGGAAGCTGGGTTTGCATGA

Peptide Sequence

PEP ID

Os03t0159700-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:3186782:3189325:1 gene:Os03g0159700 transcript:Os03t0159700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0159700-01)
Sequence

MAIAAARRRLWRGLTTAAAASVGVEADTSALLARLVAEPEYRVKATMEEASGGSSAAAAF
WEPLAAALLRASSPTKANLVLEWKLEKLIKEGIRDCEPYSVIIRFCRETKNAEFAMKVFE
FVEELGIQLNTGIFNALINAFLSVGDLLAAMTLYEAMEDIEDCKPNSATYDAFISAFSRL
GSGHAMMSWYLASKDAGFTPSIKAFEYLITGFVKLDRLDDAEVVFEEMICFEIKPNFAIL
EAKLELLSRRKDPNRVKVFLELVSDGNQELSEATVERLTRLCLYEDKIGELDQLLSLVQG
MHTSSLTKLHCGIIRFYANADRLSDMEHAIFQMLDNGMVFAHSEDVEAVICSYFRHKDFD
RLDLFLNRIRSLYKLTRSTYDILISGYQRLNLHGRLDLAIKDMREAGFA

Transcript Sequence

Transcript ID

Os03t0159700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:3186782:3189325:1 gene:Os03g0159700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0159700-01)
Sequence

AGAAGCTACCGCCGCCGATCACCGATGGCGATCGCCGCCGCGCGCCGGCGGCTGTGGCGC
GGGCTGACGACTGCGGCCGCCGCCTCCGTAGGGGTGGAAGCGGACACCAGCGCCTTGCTC
GCGCGCCTTGTCGCCGAGCCTGAGTACCGCGTGAAGGCGACGATGGAGGAGGCGAGCGGC
GGCTCCTCCGCGGCGGCCGCCTTCTGGGAGCCCCTCGCCGCCGCCCTCCTCCGCGCGTCG
TCCCCGACTAAGGCAAACCTCGTCTTGGAATGGAAGCTAGAGAAGCTAATCAAGGAAGGG
ATCCGTGATTGTGAGCCCTACTCAGTGATAATCCGTTTCTGCCGAGAGACAAAGAATGCA
GAATTTGCAATGAAAGTCTTTGAATTCGTGGAGGAGCTTGGAATTCAGCTGAACACTGGC
ATTTTCAATGCCCTTATCAATGCTTTCTTGTCGGTAGGAGATCTCCTTGCTGCAATGACC
TTATATGAGGCTATGGAAGACATAGAGGATTGCAAGCCCAACTCCGCTACATATGATGCA
TTCATTTCTGCATTTTCACGGCTTGGGAGTGGCCATGCAATGATGAGCTGGTACCTGGCA
TCAAAGGATGCAGGATTTACTCCTAGCATTAAGGCCTTTGAATATTTGATCACAGGTTTT
GTGAAGTTGGACAGGCTAGATGATGCTGAAGTGGTATTTGAAGAAATGATTTGCTTTGAA
ATTAAGCCAAACTTTGCTATACTGGAGGCCAAGCTTGAGCTGCTTTCAAGAAGGAAAGAC
CCTAACAGGGTAAAAGTATTTTTGGAACTTGTAAGCGATGGGAATCAAGAGTTGAGTGAA
GCTACAGTTGAGAGGTTAACAAGATTATGCCTGTACGAAGACAAAATTGGTGAACTGGAC
CAGTTACTTTCCCTAGTACAAGGCATGCACACGAGTTCTTTAACTAAGCTGCACTGTGGA
ATTATCAGATTCTATGCTAATGCTGATCGCTTGTCTGATATGGAGCATGCAATTTTCCAG
ATGTTGGATAATGGCATGGTTTTTGCCCACTCAGAGGATGTTGAGGCTGTTATCTGTTCT
TATTTTCGTCACAAGGACTTTGATAGGTTGGATCTATTCTTAAACCGAATACGGAGTTTG
TACAAGCTCACCCGGTCTACTTATGATATATTGATTTCTGGATATCAGAGGTTGAATTTA
CACGGAAGGCTCGACTTGGCCATAAAAGATATGAGGGAAGCTGGGTTTGCATGAGTTCCT
GCAAAACATTCATTGTTCTGTGACCTCCTAAAAACAAATTTCCTGTGGATTTTGGAAAAG
AAGCAGGCTCCATGTCAGAAAGCTTCATGCAAAGTTTGAGCTTAAAGCATTGCCTCCTGT
TCATTCATGAAAACAACGCCTCGATGACAGGAATTAATTAATACTTCCATGATGCTTATG
TTCCTTGCAAAACAAGCTAGTAAACCTGTTTGTATGTTACTTTTCAGAATCTCAGGTCCA
GTTTTGTACAAACCATCAACTTGTTTTCTTCTCCTAATAGGAAAAAAAAAACGTACCAGC
TGC