Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0155900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:3021246:3022564:1 gene:Os03g0155900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 18 description:Alpha-expansin OsEXPA18. (Os03t0155900-01)
Sequence

ATGGGGAACATTGTCCTGCAGCTGCTCGCGATTCTTGCACTCTGCATTGCACCGGCGAGG
TCCGGCTGGCTCCAGGGCACCGCCACGTTCTACGGCGGCGCCGACGGCTCCGGCACCATG
GGTGGTGCGTGCGGGTACGGGAATCTGTACGACCAGGGCTACGGCATCAACAACGCGGCG
CTGAGCACGCCACTGTTCAACAACGGGGCGTCGTGCGGGCAATGCTACCTCATCATCTGC
AACTACGACAAGGCGCCCAGCGGGTGCAGGATGGGCACGGCGATCACCGTGACGGGCACC
AACTTCTGCCCGCCCAACTATGACCTCCCCTACGGCGGCTGGTGCAACACGACCCGCCCT
CACTTCGACATGTCCCAGCCCGCCTGGGAGAACATTGGCATCTACAGCGCTGGCATCGTC
CCGATTCTCTACCAACAGGTGAAGTGCTGGAGAAGTGGGGGAGTGAGATTCACCATCACC
GGGTTGAACTACTTCGAGCTGGTGTTGGTGACGAACATGGCCGGGAGCGGGTCGATCGCG
AGCATGTCGGTGAAGGGCTCAAGCACGGGGTGGATTCAGATGTCGAGGAATTGGGGCGCC
AATTGGCAGTGTCTCGCCGGACTGGCTGGTCAGGCGCTCAGTTTCACCGTCACCTCCACC
GGCGGCCAGACCATCGTCTTCGACAGCGTCGTGCCGGCGGGGTGGTCGTTCGGGCAAACC
TTCAGCACCTACCAGCAGTTCGACTACTAA

Peptide Sequence

PEP ID

Os03t0155900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:3021246:3022564:1 gene:Os03g0155900 transcript:Os03t0155900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 18 description:Alpha-expansin OsEXPA18. (Os03t0155900-01)
Sequence

MGNIVLQLLAILALCIAPARSGWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAA
LSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDLPYGGWCNTTRP
HFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIA
SMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQT
FSTYQQFDY

Transcript Sequence

Transcript ID

Os03t0155900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:3021246:3022564:1 gene:Os03g0155900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 18 description:Alpha-expansin OsEXPA18. (Os03t0155900-01)
Sequence

AGCTATAGCTACAGGAAATCATGGGGAACATTGTCCTGCAGCTGCTCGCGATTCTTGCAC
TCTGCATTGCACCGGCGAGGTCCGGCTGGCTCCAGGGCACCGCCACGTTCTACGGCGGCG
CCGACGGCTCCGGCACCATGGGTGGTGCGTGCGGGTACGGGAATCTGTACGACCAGGGCT
ACGGCATCAACAACGCGGCGCTGAGCACGCCACTGTTCAACAACGGGGCGTCGTGCGGGC
AATGCTACCTCATCATCTGCAACTACGACAAGGCGCCCAGCGGGTGCAGGATGGGCACGG
CGATCACCGTGACGGGCACCAACTTCTGCCCGCCCAACTATGACCTCCCCTACGGCGGCT
GGTGCAACACGACCCGCCCTCACTTCGACATGTCCCAGCCCGCCTGGGAGAACATTGGCA
TCTACAGCGCTGGCATCGTCCCGATTCTCTACCAACAGGTGAAGTGCTGGAGAAGTGGGG
GAGTGAGATTCACCATCACCGGGTTGAACTACTTCGAGCTGGTGTTGGTGACGAACATGG
CCGGGAGCGGGTCGATCGCGAGCATGTCGGTGAAGGGCTCAAGCACGGGGTGGATTCAGA
TGTCGAGGAATTGGGGCGCCAATTGGCAGTGTCTCGCCGGACTGGCTGGTCAGGCGCTCA
GTTTCACCGTCACCTCCACCGGCGGCCAGACCATCGTCTTCGACAGCGTCGTGCCGGCGG
GGTGGTCGTTCGGGCAAACCTTCAGCACCTACCAGCAGTTCGACTACTAAGCTATATATG
TTCAGACATCAGGAACATCAAGATCGTCGTCTGAAATGTGAATGTCTGATCGATCGAGCA
TTCATACTTCGTTTTCATTTGTAATTAAGCTAGAGCGCTCTAAGATCGAGCATTGTTTAT
TGGGATCATTAATTCATTTGATTGTTCAGTTGCTAATTGATGGATGTAAATTAAGTTGCA
AT