Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0148800-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:2713317:2715918:-1 gene:Os03g0148800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os03t0148800-01)
Sequence	ATGCGCATCCGCCGCTACGCCGCGCGCCTCCTCGCCTCCTCCACCGCCACCGCCCCCTCC TCCCTCCCGCCGCCCCCCGCCGCCTCCGCGGCCTGGTGCCACGCCGCCGCGGACGATTGC GCCATCTGCGACCTCACCCGCTCCGCCTCCCCGCAGGTGGTGGCGCCGGACGCAATCAAG CAGAAGGGGCACATTGCCGGCCGGGCGCTGGAACCCGAGCTCAGGAGCGATCCGCGCGTC GGACTAGCCGAACGAACTCCTGTTCCGGAAGATCAAGGGCGCGATATAGATGACGGTCCT CCCGCGAAAAGATCTCTCACGTTTACTGATGCTGCGGCGAGGCTAGAAGGTTCGGGAAAT GTTGGTGCTGGAGTTGCTACTGAACCAGCAGCTAGACTAGGAGCCCCCGTTGCTAATGGA GCTGTTAGTGGGCAGGAGGATAGAGCAGCAACTTGTCTTGCGGATGAATCTGCTGCGGAG CTGATTGCTACCGGGGTAACTTCTCTCGTTACCGGAGCAACCGCTGAACCAGAGGTTTTA AAAGGGGCTTCATTTGCTAATACAAATGTTACCGAGCCAAGAGTTTCGGAGAGAGTTCCT CTTGTGCGTGAAGCTGCAACTGAGCCAGAAGCTGAAGTCTCTATGCGAGAAGTTACAGAA GGAGCTCTCCCTGATGGTGAAGGTGCTGCAAAGTTGGAAATTACAGGGGGGCTTTCTCGA GAATCTGCTGACAAAATGGAAGTTACAAAGGGAATTTCTCTTGTTACTGAAGCTTCTGCT GATTCAGAACTTGCACAGAGAGTTCCTACTGAACCAGGAGTTGAACTCTCTCTGCCGGAA GTTACAGAGAGAGTTCCTGTTGTGACTGAAGATTTCACTGAGCTAGGAGATACATTCAGT GGCCTACATATTACAGGGTTCGCTTCCCTGGATAATGAAGGTTCCGTGGAACAAGAAGTC ACAGGAAGTGGTTCTCTTGTAAATGAAGCTACAGAGATGGAAGTTAAGGAAGGAACCTGT ATCTTCACCAGAGTTGCCACAGAGCTGGGAGATACTGGTAGAGTTTCTGCTTGTAGTGGA GATGGTGACATTGCTTTAGATGAGCCACGACCTCCTGATTGTGTTTCGGAGGTTGCCAAT GTGAATGTTGGAAATGCAGGAGAGGCTGTTGCGAGCAAAGTGCAGCCTTTTAGAGACAAT GCAGAAAGTGTTGGTGGTTCTATTAATTCAACAGGCAATGGCCATGTTAGCTCCAAAAGT CCAACTGCAGATGAAGCAGCACCACCTGGTGGATGTACTGATACACCCAGTGTTTCATGT TTATCAGACATTGTGGCTAGAAGCATCGGTAAGTCAGGGAGAACAGATATCATATGTTAT GTTAGGCGCAGGGGTAAAAGGAAGCTGGAAATGGTGGAGGTAAAGGAAGAAAATGTTGAA ATGGATGACAGTGCTATCTGTGATCAATATGATGATAAAGTGGCATCAGAAAGAACTGGT CCTTGCGAGAGTGTGACGTCAACTGCTGTATCTGTAGAGATTAAAATTGCTGACATAAAG AGAGAGCTTGAAGATAATTCAACTGCTAGCAAGGGTAAAAAGAAGAGGGCCAAAAGGTTT CAATGTGAAATAGATTATTGCCGCATGACATTCAAGAACCGAGCTGAGCTTTCTGTTCAT AAAAAGAACACATGCACGGTCAAGTCATGCGGCAGACATTTCAGATCCCACAAGTATCTG AGGCGCCACCAGAGCATTCACAATGATGATATGCCATACAAGTGTCCATGGGAGGGTTGC AGTATGGCTTTCAAGTGGTCATGGGATCGGGGTGAGCATTTCCAAGTCCATGCTGGCAAA AGACCTTATAAATGCACAACACCTGGGTGCAGCAAGATATACAAGTTTGTTTCGGACTTC ACCCGGCATAAGAGGAGGTGCAAACCTCAGAGGTAA

Peptide Sequence

PEP ID	Os03t0148800-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:2713317:2715918:-1 gene:Os03g0148800 transcript:Os03t0148800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os03t0148800-01)
Sequence	MRIRRYAARLLASSTATAPSSLPPPPAASAAWCHAAADDCAICDLTRSASPQVVAPDAIK QKGHIAGRALEPELRSDPRVGLAERTPVPEDQGRDIDDGPPAKRSLTFTDAAARLEGSGN VGAGVATEPAARLGAPVANGAVSGQEDRAATCLADESAAELIATGVTSLVTGATAEPEVL KGASFANTNVTEPRVSERVPLVREAATEPEAEVSMREVTEGALPDGEGAAKLEITGGLSR ESADKMEVTKGISLVTEASADSELAQRVPTEPGVELSLPEVTERVPVVTEDFTELGDTFS GLHITGFASLDNEGSVEQEVTGSGSLVNEATEMEVKEGTCIFTRVATELGDTGRVSACSG DGDIALDEPRPPDCVSEVANVNVGNAGEAVASKVQPFRDNAESVGGSINSTGNGHVSSKS PTADEAAPPGGCTDTPSVSCLSDIVARSIGKSGRTDIICYVRRRGKRKLEMVEVKEENVE MDDSAICDQYDDKVASERTGPCESVTSTAVSVEIKIADIKRELEDNSTASKGKKKRAKRF QCEIDYCRMTFKNRAELSVHKKNTCTVKSCGRHFRSHKYLRRHQSIHNDDMPYKCPWEGC SMAFKWSWDRGEHFQVHAGKRPYKCTTPGCSKIYKFVSDFTRHKRRCKPQR

Transcript Sequence

Transcript ID	Os03t0148800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:2713317:2715918:-1 gene:Os03g0148800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os03t0148800-01)
Sequence	AGCTGGAAGAAAAGCCACGCGGGTCGCGGCAACCCTAGACCACCAAGAAGGCCGAGGCGG AGGCGAGAGGCGGAACACGAGGAGGCCACCAGAAAATTCCTCCCTCCCCCAGGAGAGGCG AGGCGAAGCGGAGCTCTCCTCCCAAATTCCCCAACCCTCCACCGCCTCCACCGCCACCGC CATGCGCATCCGCCGCTACGCCGCGCGCCTCCTCGCCTCCTCCACCGCCACCGCCCCCTC CTCCCTCCCGCCGCCCCCCGCCGCCTCCGCGGCCTGGTGCCACGCCGCCGCGGACGATTG CGCCATCTGCGACCTCACCCGCTCCGCCTCCCCGCAGGTGGTGGCGCCGGACGCAATCAA GCAGAAGGGGCACATTGCCGGCCGGGCGCTGGAACCCGAGCTCAGGAGCGATCCGCGCGT CGGACTAGCCGAACGAACTCCTGTTCCGGAAGATCAAGGGCGCGATATAGATGACGGTCC TCCCGCGAAAAGATCTCTCACGTTTACTGATGCTGCGGCGAGGCTAGAAGGTTCGGGAAA TGTTGGTGCTGGAGTTGCTACTGAACCAGCAGCTAGACTAGGAGCCCCCGTTGCTAATGG AGCTGTTAGTGGGCAGGAGGATAGAGCAGCAACTTGTCTTGCGGATGAATCTGCTGCGGA GCTGATTGCTACCGGGGTAACTTCTCTCGTTACCGGAGCAACCGCTGAACCAGAGGTTTT AAAAGGGGCTTCATTTGCTAATACAAATGTTACCGAGCCAAGAGTTTCGGAGAGAGTTCC TCTTGTGCGTGAAGCTGCAACTGAGCCAGAAGCTGAAGTCTCTATGCGAGAAGTTACAGA AGGAGCTCTCCCTGATGGTGAAGGTGCTGCAAAGTTGGAAATTACAGGGGGGCTTTCTCG AGAATCTGCTGACAAAATGGAAGTTACAAAGGGAATTTCTCTTGTTACTGAAGCTTCTGC TGATTCAGAACTTGCACAGAGAGTTCCTACTGAACCAGGAGTTGAACTCTCTCTGCCGGA AGTTACAGAGAGAGTTCCTGTTGTGACTGAAGATTTCACTGAGCTAGGAGATACATTCAG TGGCCTACATATTACAGGGTTCGCTTCCCTGGATAATGAAGGTTCCGTGGAACAAGAAGT CACAGGAAGTGGTTCTCTTGTAAATGAAGCTACAGAGATGGAAGTTAAGGAAGGAACCTG TATCTTCACCAGAGTTGCCACAGAGCTGGGAGATACTGGTAGAGTTTCTGCTTGTAGTGG AGATGGTGACATTGCTTTAGATGAGCCACGACCTCCTGATTGTGTTTCGGAGGTTGCCAA TGTGAATGTTGGAAATGCAGGAGAGGCTGTTGCGAGCAAAGTGCAGCCTTTTAGAGACAA TGCAGAAAGTGTTGGTGGTTCTATTAATTCAACAGGCAATGGCCATGTTAGCTCCAAAAG TCCAACTGCAGATGAAGCAGCACCACCTGGTGGATGTACTGATACACCCAGTGTTTCATG TTTATCAGACATTGTGGCTAGAAGCATCGGTAAGTCAGGGAGAACAGATATCATATGTTA TGTTAGGCGCAGGGGTAAAAGGAAGCTGGAAATGGTGGAGGTAAAGGAAGAAAATGTTGA AATGGATGACAGTGCTATCTGTGATCAATATGATGATAAAGTGGCATCAGAAAGAACTGG TCCTTGCGAGAGTGTGACGTCAACTGCTGTATCTGTAGAGATTAAAATTGCTGACATAAA GAGAGAGCTTGAAGATAATTCAACTGCTAGCAAGGGTAAAAAGAAGAGGGCCAAAAGGTT TCAATGTGAAATAGATTATTGCCGCATGACATTCAAGAACCGAGCTGAGCTTTCTGTTCA TAAAAAGAACACATGCACGGTCAAGTCATGCGGCAGACATTTCAGATCCCACAAGTATCT GAGGCGCCACCAGAGCATTCACAATGATGATATGCCATACAAGTGTCCATGGGAGGGTTG CAGTATGGCTTTCAAGTGGTCATGGGATCGGGGTGAGCATTTCCAAGTCCATGCTGGCAA AAGACCTTATAAATGCACAACACCTGGGTGCAGCAAGATATACAAGTTTGTTTCGGACTT CACCCGGCATAAGAGGAGGTGCAAACCTCAGAGGTAAAAGCTTGTGTGATACTACAGATT TAGGATAGGAGTAAAAATCTTGTACTTGCTACTGTAGATGTTTTTTTTATTTATTTGCTG GATGATTGGTGTTGTTCTAGCGACCTATAGCAGGATTGCTTGTTACTTTGTTGAGAAAAT TTTACAATCTGTAGTTCGGAAATTTTGAATGCGTGTTTCTCAAATATCGTTATACATTCT AAAAATGCTGCTTCAT