Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0143600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:2409889:2413431:1 gene:Os03g0143600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Inhibitor of growth protein 1. Splice isoform 2. (Os03t0143600-01)
Sequence

ATGGGGTTCCTCGAGGACTTTCAAGCCAGTGTTGAAGCATTGCCAGCTATGCTGCAAAGG
AACTATTCATTAATGCGGGAGCTAGATAAAAGCTTGCAAGGTGTGCAAACGGGAAATGAG
CAGCGCTGTCAGCAAGAAATAGAAGACATTAAGCATGGACTTGAATCTGGAAGTATTACA
TATGACCCGGCAAAGCTTAAATTTTCTGATGAAGCAATCGAGGAGCAGAAGCATTGTGTT
CGAATTGCTGATGAGAAGGTGGCTTTAGCCAGTCAGACTTATGACCTGGTTGATGCTCAT
ATCCAACAGCTAGATCAGTTTATGAGAAAACTTGAAGAACTTCGACAAGAAAAGGAGGCA
GCTACAACTGCTGCTGCTGCTGCTGCTGCGGCGGCTGCTAGTGTTGCTACAGGTACGCCT
GTTGCTGCTACTGTAACAGCTAGCGCTGGTACTTCAACTGCTGACAATACTCCAAAAGGT
GGAAGGTCTAGCGAAAGAGGCCGAGGGGGTCGAAAGAAGACTGCTAAGGTGCCCACTGAG
CAACCAGCACCAGCCATAGATTTAGAACTGCCTGTGGATCCTAACGAACCAACATATTGC
CTCTGCAACCAAGTCAGCTACGGAGAGATGGTCGCATGCGACAATAATGATTGCAAGATC
GAATGGTATCACTTTGGGTGCGTCGGCGTGAAAGAGCATCCGAAGGGGAAGTGGTATTGC
CCAAGTTGCATTGGATTCCAAAAGAAGCGAAAAGGAAAGTGA

Peptide Sequence

PEP ID

Os03t0143600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:2409889:2413431:1 gene:Os03g0143600 transcript:Os03t0143600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Inhibitor of growth protein 1. Splice isoform 2. (Os03t0143600-01)
Sequence

MGFLEDFQASVEALPAMLQRNYSLMRELDKSLQGVQTGNEQRCQQEIEDIKHGLESGSIT
YDPAKLKFSDEAIEEQKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKLEELRQEKEA
ATTAAAAAAAAAASVATGTPVAATVTASAGTSTADNTPKGGRSSERGRGGRKKTAKVPTE
QPAPAIDLELPVDPNEPTYCLCNQVSYGEMVACDNNDCKIEWYHFGCVGVKEHPKGKWYC
PSCIGFQKKRKGK

Transcript Sequence

Transcript ID

Os03t0143600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:2409889:2413431:1 gene:Os03g0143600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Inhibitor of growth protein 1. Splice isoform 2. (Os03t0143600-01)
Sequence

GAACCGCAACCCAACCCAACCCAACCTGCGCCGTGCCGGCCGGCGAGAGGCTTCTCCCGC
GGCCGCACCGCCGTGGCGCTGTCCGATCCCCTGTCCCAGCACCCTCGTCGCATGTCCAGG
TCAGGGGGCGCAGCAACCCATCTCCGGTAAACGCCATGGGGTTCCTCGAGGACTTTCAAG
CCAGTGTTGAAGCATTGCCAGCTATGCTGCAAAGGAACTATTCATTAATGCGGGAGCTAG
ATAAAAGCTTGCAAGGTGTGCAAACGGGAAATGAGCAGCGCTGTCAGCAAGAAATAGAAG
ACATTAAGCATGGACTTGAATCTGGAAGTATTACATATGACCCGGCAAAGCTTAAATTTT
CTGATGAAGCAATCGAGGAGCAGAAGCATTGTGTTCGAATTGCTGATGAGAAGGTGGCTT
TAGCCAGTCAGACTTATGACCTGGTTGATGCTCATATCCAACAGCTAGATCAGTTTATGA
GAAAACTTGAAGAACTTCGACAAGAAAAGGAGGCAGCTACAACTGCTGCTGCTGCTGCTG
CTGCGGCGGCTGCTAGTGTTGCTACAGGTACGCCTGTTGCTGCTACTGTAACAGCTAGCG
CTGGTACTTCAACTGCTGACAATACTCCAAAAGGTGGAAGGTCTAGCGAAAGAGGCCGAG
GGGGTCGAAAGAAGACTGCTAAGGTGCCCACTGAGCAACCAGCACCAGCCATAGATTTAG
AACTGCCTGTGGATCCTAACGAACCAACATATTGCCTCTGCAACCAAGTCAGCTACGGAG
AGATGGTCGCATGCGACAATAATGATTGCAAGATCGAATGGTATCACTTTGGGTGCGTCG
GCGTGAAAGAGCATCCGAAGGGGAAGTGGTATTGCCCAAGTTGCATTGGATTCCAAAAGA
AGCGAAAAGGAAAGTGAAATGTGATCAACCCTTGATAGGAGGTAGCTTCTTGATGATAAG
TGGTGATGGACGTGGGTAACAAAAACATAGTAGCTGGTACTGTGAAATACTGTTGTAGCT
TCAGTGATGATGTACATGTTACCCCTGTGTTACCGAGGAAATGCTGTAGGCGTCTTAGAG
TTAGGGACCAGTCAATCATGAAGAGCAGTTGTGCCTGTATTGGTGTATCTTCATTGCCTT
TTTTTGGTGGATGTGTAGGTTGTAATTGTAATCTATCCCTCCCATGTGGGCTTGATGCAA
TCTACACATAAATCTGTTTATAACT