Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0137400-02
CDS Infomation	cds chromosome:IRGSP-1.0:3:2065101:2067726:1 gene:Os03g0137400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 4.1 description:Protein of unknown function DUF221 domain containing protein. (Os03t0137400-01);Protein of unknown function DUF221 domain containing protein. (Os03t0137400-02)
Sequence	ATGGGGCCGACCGCGCCGCCGCCGGACGCCGGCGGCGGGGAGCCGGAGGCGTGGTACGGC AGCATCCAGTACCTGGTCAACATCTCCGCGGTGGGGGCCGCCTCCTGCGTGCTCCTCTTC CTCCTCGTCAAGCTCCGCTTCGACCACCGCCGCATCCCGGGGCCCTCCGCGCTCGCCGCC AAGCTCCTCGCCGTCTACCACGCCACCGCGCCGCAGATCGCGCTCCACTGCGGGGCCGAC GCCGCCCAGTTCCTCCTCTTCGAGCGCGCCTCCTTCCTCGTGCTCGCCGCCGTGGCCGCC GCCGCCGTCGCCGCCGCCCTCCCGCTCAACCTCCTCGCCGGGGACGCCGCCATCGCCGAC CAGTTCGCCGCCACCACCATCTCCCACATCCCCAAGTCATCCCCGCTCCTCTGGCTCCAT CTCCTCCTCACCGCCGCCGTCGTCGCCATCGCCCATCTCGGCATCTCCCGCATGGAGGAC GCCCTTCGCATCACCCGCTTCCGCGACGGCAACGGCAACCCCAGCGACCCCAACTCCAGC TCGGTTGCCGTCTTCACCATCATGATCCAGGGCATTCCCAAGACGCTCGCCGCAGACAAG ACCCCGCTCAAGGATTACTTTGAGCACAAGTACCCTGGAAAGGTGTACCGGGTCATCGTG CCCTTCGATCTCTGCACGCTGGAGTATCTAGCTGAGGAGTGGGGGAAGGTGCGGAACAGG ATTTCTTGGCTGGAGGCAAGGATGGATGCCCGCAACCTATTTGATGAATTTGCTCAGGGT GGAAGACATTCAGAAGAGCATTGGATTGTGAGGAGATGCAAAGAGCTGTGGGTGATGACA GCAGAGAGGTTCGGGTTTACTGACGAGGAAATGCTAAGGAGGTTGCAGACAAAGAAACTT GTCCTCGGTAGCAGGTTATCGGATTATAAGGATGGGCGTGCTCCCGGTGCTGGCATAGCC TTTGTGGTTTTTAAGGACGTGTATACAGCAAACAAGGCTGTGAGAGATTTCCGGATGGAA AGGAAGAAGACACCAATAGGGAGGTTCTTCCCGGTGATGGAGCTCCAGCTTGAGAGAAGC CGTTGGACTGTGGAAAGGGCACCACCGGCATCAGATATCTACTGGAACCATCTAGGGCTG AGCAAGACCTCACTAGGATTGCGGCGTATTGCAGTCAACACCTGCCTCATTCTGATGCTC TTGTTCTTCAGTTCACCATTGGCAATAATTAGTGGGATGCAAAGTGCAGCGCGGATCATC AATGTGGAGGCTATGGATAACGCCAAATCATGGCTTGTCTGGCTCCAAAGCTCTAGCTGG TTCTGGACCATTATCTTTCAGTTTCTTCCCAACGTCCTCATTTTTGTGAGCATGTATATT ATCATCCCATCAGTGCTGTCTTACTTCTCCAAGTTTGAGTGTCATCTGACAGTGTCGGGA GAGCAGAGGGCTGCATTGTTGAAGATGGTTTGCTTCTTCCTTGTTAATCTCATTCTACTG CGTGCGCTGGTGGAATCATCGCTTGAAAGTTGGATACTCAGTATGGGCCGGTGCTACCTA GACAGTGTTGATTGCAAGCAGATTGAACAATACTTAAGCCCCTCTTTTTTGTCAAGATCT TCACTCTCCTCCCTGGCATTCTTGATCACATGCACCTTTCTAGGAATATCCTTTGATCTG TTGGCTCCAATCCCTTGGATAAAGCATGTAATGAAGAAATTTAGAAAGAATGATATGGTC CAGTTGGTCCCTGAAGAAAATGAGGACTACCAACTGATGCATGATGGCGAAGAAACAAAT AATTTGAGAGCGCCTCTAATGTCTGAGAGAGAAGACAGTGGCATTCTGAATGGTATTGAG GAGCATGATCTTTCATTGTACCCGATAAACAGGAGCTTCCATATGCCAAAGCAGACATTT GACTTTGCACAATACTATGCATTTGACATTACAATATTCGCGCTCACAATGATCTACTCA CTGTTTGCTCCTCTGACAGTTCCTGTCGGCGCAGTATACTTTGGCTACCGATACCTTGTG GACAAGTACAATTTCCTGTTTATCTACAGAGTTAGAGGGTTTCCTGCAGGCAATGATGGG AAGCTGATGGACATGGTGATCTGCATCATGCAATTCTGCGTTATTTTCTTCCTTGTTGCA ATGTTACTATTCTTTGCAGTCCAAGGTGATCCTATGAAGCTACAGGCAATATGTACTCTT AGTTTGTTAGTCTTTTATAAATTGCTGCCCTCTAGAAGTGATCGCTTCCAGCCATCCTTG TTGGAAGGGATGCAGACAGTTAATAGCTTTGTAGATGGTCCAACAGATTATGAAGTTTTT TCACAACCTGACCTGGATTGGAGCCTGTATCAATCCTGA

Peptide Sequence

PEP ID	Os03t0137400-02
PEP Infomation	pep chromosome:IRGSP-1.0:3:2065101:2067726:1 gene:Os03g0137400 transcript:Os03t0137400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 4.1 description:Protein of unknown function DUF221 domain containing protein. (Os03t0137400-01);Protein of unknown function DUF221 domain containing protein. (Os03t0137400-02)
Sequence	MGPTAPPPDAGGGEPEAWYGSIQYLVNISAVGAASCVLLFLLVKLRFDHRRIPGPSALAA KLLAVYHATAPQIALHCGADAAQFLLFERASFLVLAAVAAAAVAAALPLNLLAGDAAIAD QFAATTISHIPKSSPLLWLHLLLTAAVVAIAHLGISRMEDALRITRFRDGNGNPSDPNSS SVAVFTIMIQGIPKTLAADKTPLKDYFEHKYPGKVYRVIVPFDLCTLEYLAEEWGKVRNR ISWLEARMDARNLFDEFAQGGRHSEEHWIVRRCKELWVMTAERFGFTDEEMLRRLQTKKL VLGSRLSDYKDGRAPGAGIAFVVFKDVYTANKAVRDFRMERKKTPIGRFFPVMELQLERS RWTVERAPPASDIYWNHLGLSKTSLGLRRIAVNTCLILMLLFFSSPLAIISGMQSAARII NVEAMDNAKSWLVWLQSSSWFWTIIFQFLPNVLIFVSMYIIIPSVLSYFSKFECHLTVSG EQRAALLKMVCFFLVNLILLRALVESSLESWILSMGRCYLDSVDCKQIEQYLSPSFLSRS SLSSLAFLITCTFLGISFDLLAPIPWIKHVMKKFRKNDMVQLVPEENEDYQLMHDGEETN NLRAPLMSEREDSGILNGIEEHDLSLYPINRSFHMPKQTFDFAQYYAFDITIFALTMIYS LFAPLTVPVGAVYFGYRYLVDKYNFLFIYRVRGFPAGNDGKLMDMVICIMQFCVIFFLVA MLLFFAVQGDPMKLQAICTLSLLVFYKLLPSRSDRFQPSLLEGMQTVNSFVDGPTDYEVF SQPDLDWSLYQS

Transcript Sequence

Transcript ID	Os03t0137400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:2065101:2067726:1 gene:Os03g0137400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 4.1 description:Protein of unknown function DUF221 domain containing protein. (Os03t0137400-01);Protein of unknown function DUF221 domain containing protein. (Os03t0137400-02)
Sequence	AGGGTTTCGTCACGTCCCCGTCCCCCGGCGATGGGGCCGACCGCGCCGCCGCCGGACGCC GGCGGCGGGGAGCCGGAGGCGTGGTACGGCAGCATCCAGTACCTGGTCAACATCTCCGCG GTGGGGGCCGCCTCCTGCGTGCTCCTCTTCCTCCTCGTCAAGCTCCGCTTCGACCACCGC CGCATCCCGGGGCCCTCCGCGCTCGCCGCCAAGCTCCTCGCCGTCTACCACGCCACCGCG CCGCAGATCGCGCTCCACTGCGGGGCCGACGCCGCCCAGTTCCTCCTCTTCGAGCGCGCC TCCTTCCTCGTGCTCGCCGCCGTGGCCGCCGCCGCCGTCGCCGCCGCCCTCCCGCTCAAC CTCCTCGCCGGGGACGCCGCCATCGCCGACCAGTTCGCCGCCACCACCATCTCCCACATC CCCAAGTCATCCCCGCTCCTCTGGCTCCATCTCCTCCTCACCGCCGCCGTCGTCGCCATC GCCCATCTCGGCATCTCCCGCATGGAGGACGCCCTTCGCATCACCCGCTTCCGCGACGGC AACGGCAACCCCAGCGACCCCAACTCCAGCTCGGTTGCCGTCTTCACCATCATGATCCAG GGCATTCCCAAGACGCTCGCCGCAGACAAGACCCCGCTCAAGGATTACTTTGAGCACAAG TACCCTGGAAAGGTGTACCGGGTCATCGTGCCCTTCGATCTCTGCACGCTGGAGTATCTA GCTGAGGAGTGGGGGAAGGTGCGGAACAGGATTTCTTGGCTGGAGGCAAGGATGGATGCC CGCAACCTATTTGATGAATTTGCTCAGGGTGGAAGACATTCAGAAGAGCATTGGATTGTG AGGAGATGCAAAGAGCTGTGGGTGATGACAGCAGAGAGGTTCGGGTTTACTGACGAGGAA ATGCTAAGGAGGTTGCAGACAAAGAAACTTGTCCTCGGTAGCAGGTTATCGGATTATAAG GATGGGCGTGCTCCCGGTGCTGGCATAGCCTTTGTGGTTTTTAAGGACGTGTATACAGCA AACAAGGCTGTGAGAGATTTCCGGATGGAAAGGAAGAAGACACCAATAGGGAGGTTCTTC CCGGTGATGGAGCTCCAGCTTGAGAGAAGCCGTTGGACTGTGGAAAGGGCACCACCGGCA TCAGATATCTACTGGAACCATCTAGGGCTGAGCAAGACCTCACTAGGATTGCGGCGTATT GCAGTCAACACCTGCCTCATTCTGATGCTCTTGTTCTTCAGTTCACCATTGGCAATAATT AGTGGGATGCAAAGTGCAGCGCGGATCATCAATGTGGAGGCTATGGATAACGCCAAATCA TGGCTTGTCTGGCTCCAAAGCTCTAGCTGGTTCTGGACCATTATCTTTCAGTTTCTTCCC AACGTCCTCATTTTTGTGAGCATGTATATTATCATCCCATCAGTGCTGTCTTACTTCTCC AAGTTTGAGTGTCATCTGACAGTGTCGGGAGAGCAGAGGGCTGCATTGTTGAAGATGGTT TGCTTCTTCCTTGTTAATCTCATTCTACTGCGTGCGCTGGTGGAATCATCGCTTGAAAGT TGGATACTCAGTATGGGCCGGTGCTACCTAGACAGTGTTGATTGCAAGCAGATTGAACAA TACTTAAGCCCCTCTTTTTTGTCAAGATCTTCACTCTCCTCCCTGGCATTCTTGATCACA TGCACCTTTCTAGGAATATCCTTTGATCTGTTGGCTCCAATCCCTTGGATAAAGCATGTA ATGAAGAAATTTAGAAAGAATGATATGGTCCAGTTGGTCCCTGAAGAAAATGAGGACTAC CAACTGATGCATGATGGCGAAGAAACAAATAATTTGAGAGCGCCTCTAATGTCTGAGAGA GAAGACAGTGGCATTCTGAATGGTATTGAGGAGCATGATCTTTCATTGTACCCGATAAAC AGGAGCTTCCATATGCCAAAGCAGACATTTGACTTTGCACAATACTATGCATTTGACATT ACAATATTCGCGCTCACAATGATCTACTCACTGTTTGCTCCTCTGACAGTTCCTGTCGGC GCAGTATACTTTGGCTACCGATACCTTGTGGACAAGTACAATTTCCTGTTTATCTACAGA GTTAGAGGGTTTCCTGCAGGCAATGATGGGAAGCTGATGGACATGGTGATCTGCATCATG CAATTCTGCGTTATTTTCTTCCTTGTTGCAATGTTACTATTCTTTGCAGTCCAAGGTGAT CCTATGAAGCTACAGGCAATATGTACTCTTAGTTTGTTAGTCTTTTATAAATTGCTGCCC TCTAGAAGTGATCGCTTCCAGCCATCCTTGTTGGAAGGGATGCAGACAGTTAATAGCTTT GTAGATGGTCCAACAGATTATGAAGTTTTTTCACAACCTGACCTGGATTGGAGCCTGTAT CAATCCTGAAGAAAATTTCAAGGTCAATACACACTTGTTTAGTTATTTCTTATCTCTTTC ACCTGAGCTTTTCATTGTACCACTCTTGACCTTTTGTACAGTTACATAGGTAACTCTTTT GGCTTCTAGCTGAATTTGTTTGTTGGAAATGAAAAGCACGCACTGTTTAGATCATTAAAG CTGTGTATCTAAAATTCTATGAGAAGAAAATACTTAACATTATCCT