Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0130500-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:1720158:1727907:-1 gene:Os03g0130500 gene_biotype:protein_coding transcript_biotype:protein_coding description:EF hand domain containing protein. (Os03t0130500-01);Similar to ESTs AU031435(E61570). (Os03t0130500-02)
Sequence

ATGGCTGGGATGGAGGCCTTCGAGGCCTACTTCCGCCGCGCGGATTTGAACCAGGACGGC
CGCATCAGCGGCCAGGAGGCCGTCGCCTTCTTCCAGGGCGCCAACCTGCCGCAGCAAGTC
CTCGCCCAGGTATGGATGCACGCCGACAAGAACAAGACCGGCTTCCTCGGCCGGCCGGAG
TTCTTCAACGCGCTGCGCCTCGTCACCGTGGCGCAGAGCGGGCGTCAGCTCACGCCCGAC
ATAGTGCAGTCGGCGCTGTATGGCCCTGCCGCTGCTAGAATTCCAGCTCCCAAGATAGCC
GGCGGCGGGCAAGCTCCCCCGCAGATGGCTGCGGCGGGCGCTCCCAGGCCGCAGGTAAAT
GCCGCGGTGTCACCTGCTCCAGGGCAGGCTGGAGCTCCGCAGCCGCAGATGAATGTTGCT
GGTGCTCCAAGGCCTCAGGGAAGTGGTATGATGCCGGGCTCTGCTCAAATTGGCGGTTCG
CAGCAGGTGAACGCCGGAGCCGTGCCAAGACCCCAAGGGGTCAATTCTATGATGCCGGCT
GCAAGTCAGGGTGGTGCTCTGCAGCCAACTCAGTTTGCAACGCAGAGGGGAATGCAATCA
CAGCCGCCTAGCATGGGGTTTAATCAACAGCCTCCTCCTTCGAGTACTGGTTTCATGAGG
CCAACTCAGCCAGGAGCTCCAGCAGCATCACTTCAAGGCCAAGGACCCGGGATTAATCAA
GTACCACTAGGAGGAGGCAGCATGGGAGCACCTGCTGGTTGGCGAGGAGGCAATGTTGGT
TCCGTTGGAGGTCTCCCGCAAGCTACTCCAGGAGCAACTGCTCCACAACAAGCAACACCG
GGTGGATTTGGTCTTACATTGTCTAGTACAATGGGCATGGCTCCCGGACAACAGGCACAA
GGAACGCCTCCTTCGTCAATGCCACCACAAAGCAACAGTGCTGTATCAGCTCAAGATTCG
AAAGCTTTGGTGCTGTCTGGAAATGGCTCTGCCAGTGGCTTAGGAGCAAGCAATGACATC
TTCTCTGCTCTTACTCAGCCTAAGTCGAATGTATCCACACTTTCATTTCCGACGAGCATG
GCTCCTAATTCATCCAGTTTTATGTCCACACCATCTGGCTCCCAGAACCTGTCGAATCTA
GCTCAGTTTGGTTCTCAACAAGGTATTCCGACAGTGAGTTCTGGTGGCAGTCAACCTCAA
CAGACTCATCCCATCACAAAGCCGAGTGTTCCAGCACCAACTGTATCTGGTGTTTCTGCT
GGAGTTTCTAATTCAGCTTCTCAATGGCCAAAAGTTACTCAGTCTGACATCCAGAAGTAC
ACTAAAGTCTTTGCGGATGTTGATAGGGACAGAGATGGCAAAATAACTGGCGCGGAAGCT
CGCACCCTGTTCCTCAGTTGGAGACTTCCAAGAGAGATTCTGAAGCAAGTGTGGGACCTG
TCTGACCAAGATAATGATGGCATGCTTTCTTTGAGAGAGTTTTGCATTGCTCTTTATTTG
ATGGAGAGGCACCGAGCTGGAACTCCTTTGCCTCCAGCACTTCCTGACTCTCTTAAATAT
GATGAGGTACTGCTGCGTGCAACAGGCTTGCCTTCAACAGCATACAACGGCCCGTCATGG
CAACAAAATCAAGGACTGCCACACAAGGGTCCTGGAGCAGCTGGGATGCCTGCTACTGGT
GTGCGGCAACCTTTGCCACCACATTTGCAGGCACAGATGGATGGTGCTAACAGACCAGGG
CAACCAAGACCTCACATGCCTGGTATGGATAACCATGCAGCACCTCAAGCAAATAAAGAT
GACGGAAGTGGAGCGAACTCAGCTGTGCAGGAGGATGCCCCTAAGAAGGTTGAGGTGGAG
AAGCAAGTCCTAGATTCCAGAGAGAAACTAGAATACTACCGTACAAAGATGCAAGATCTT
GTTCTGTACAAAAGTCGGTGTGACAACAGGCTGAATGAAATCACAGAAAGGGCATCCTCT
GATAAACGTGAGGTGGAATCATTAGCTAAGAAGTATGAAGAGAAATACAAGCAAGTGGCA
GAGTTAGCTTCCAAACTGGCAGTTGAAGAACATGCCTTCCGTGATGTTCAGGAGAGGAAA
GTTGAACTGCATGATGCATTAGTTAAAATGGTACAAGGTGGAAGTGTTGATGGTTTGCTT
CAGGTTCGAGCTGATCGAATCCAATACCAATTAGAGGAGATGGAGAAAGCTTTTAGTGAA
CGGTGCAAGCACTTTGGACTGCAGTTCAAGCCATCTGCATCAGTTGAGCTTCCTTTTGGT
TGGGAACCTGGGAAGCAAGAGGGGGCAATTGAGTGGGATGAAGACTGGGACAAATTTGAG
GATGAAGGGTTTGGTTTTGTAAAGGACAATGGTACAATTGTTGAAAACCCAGTTGCTTCT
GAAAATGTGAAAGTGCCATCTCTCTGGAATGATATGGATGAGAGCCCTGTTGCATCTTCG
AACGGTCACATCAAGGCTGAGAGACATTACAGAGCTGGTGATCATGCAGCTGAGAGTGAC
TTAGGGTATGATTTTGGTGAGGAATCTGTAAGGAGCCCCAGCAGTGCTGGAAGAAGTGCA
TCTGGAAGTCCATTTGTGTCTTCAAATTTTGCGATGCATGACTCATCTCCCAGCAAAAAG
GAAACCTACAGTGACCATGGTGGTTCTGAATCCATTTTTGGTGACAAATATGCCGATGAA
ACCTCCTGGAACTTTGATGACCAAGACACTGAATCTGTTTGGGGATCTAATGCAATGAAC
AACGAGTCTGACCATCATGGAAGTGCACACAACTCTTTCTTTGGGTCAGATGACTTCGGT
GTAAATCCTGTTAGGGTGGGCTCTCCAAGTGGTGCCAGTACCTATGGAAAGAAGAAAAGT
TCATTCTTTGATGATTCTGTTCCAAGTTCACCTGCATACACATCTGGATTCTCACCAAAA
TTCAGTGAAAGCCGCGATGATAGCTCCTCATATAACTTAGGAAGGTTCGATTCCTTCAGA
TCCCAGGAGAGCGGATTCTTCCCTCAGGAAAGTCGTTTTTCCAGGTTTGACTCCATAAAC
AACTCCAAAGGTGAGAATGTAACTGGATTCGATTCACCGAAAAGCTCAACAAATTTCGGT
CGGTTTGATTCTTTTGATGATGCCGATCCATTTGGTTCAAGTGGACCCTTTAAAGCATCA
GGTAGCAGGTCTCCCCCCAAATTCTGA

Peptide Sequence

PEP ID

Os03t0130500-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:1720158:1727907:-1 gene:Os03g0130500 transcript:Os03t0130500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:EF hand domain containing protein. (Os03t0130500-01);Similar to ESTs AU031435(E61570). (Os03t0130500-02)
Sequence

MAGMEAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPE
FFNALRLVTVAQSGRQLTPDIVQSALYGPAAARIPAPKIAGGGQAPPQMAAAGAPRPQVN
AAVSPAPGQAGAPQPQMNVAGAPRPQGSGMMPGSAQIGGSQQVNAGAVPRPQGVNSMMPA
ASQGGALQPTQFATQRGMQSQPPSMGFNQQPPPSSTGFMRPTQPGAPAASLQGQGPGINQ
VPLGGGSMGAPAGWRGGNVGSVGGLPQATPGATAPQQATPGGFGLTLSSTMGMAPGQQAQ
GTPPSSMPPQSNSAVSAQDSKALVLSGNGSASGLGASNDIFSALTQPKSNVSTLSFPTSM
APNSSSFMSTPSGSQNLSNLAQFGSQQGIPTVSSGGSQPQQTHPITKPSVPAPTVSGVSA
GVSNSASQWPKVTQSDIQKYTKVFADVDRDRDGKITGAEARTLFLSWRLPREILKQVWDL
SDQDNDGMLSLREFCIALYLMERHRAGTPLPPALPDSLKYDEVLLRATGLPSTAYNGPSW
QQNQGLPHKGPGAAGMPATGVRQPLPPHLQAQMDGANRPGQPRPHMPGMDNHAAPQANKD
DGSGANSAVQEDAPKKVEVEKQVLDSREKLEYYRTKMQDLVLYKSRCDNRLNEITERASS
DKREVESLAKKYEEKYKQVAELASKLAVEEHAFRDVQERKVELHDALVKMVQGGSVDGLL
QVRADRIQYQLEEMEKAFSERCKHFGLQFKPSASVELPFGWEPGKQEGAIEWDEDWDKFE
DEGFGFVKDNGTIVENPVASENVKVPSLWNDMDESPVASSNGHIKAERHYRAGDHAAESD
LGYDFGEESVRSPSSAGRSASGSPFVSSNFAMHDSSPSKKETYSDHGGSESIFGDKYADE
TSWNFDDQDTESVWGSNAMNNESDHHGSAHNSFFGSDDFGVNPVRVGSPSGASTYGKKKS
SFFDDSVPSSPAYTSGFSPKFSESRDDSSSYNLGRFDSFRSQESGFFPQESRFSRFDSIN
NSKGENVTGFDSPKSSTNFGRFDSFDDADPFGSSGPFKASGSRSPPKF

Transcript Sequence

Transcript ID

Os03t0130500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:1720158:1727907:-1 gene:Os03g0130500 gene_biotype:protein_coding transcript_biotype:protein_coding description:EF hand domain containing protein. (Os03t0130500-01);Similar to ESTs AU031435(E61570). (Os03t0130500-02)
Sequence

GCAAGTTGGCACGCTCACCATCTCGACACCCGGAGGAGGAGGACCCCAACCACTGCCCTC
GCAGACAGAGAGGAGAAGAGCGCCTCCTGCCTGCCGCTGCAGCCGCCCGCGACACGCTCC
CCCCTCCCGAGATCTCCGCCGCTCGCCGCCGCAGATCCGCGCGGCGTGGACTCCGGCCCA
GATCCCGGCGATGGCTGGGATGGAGGCCTTCGAGGCCTACTTCCGCCGCGCGGATTTGAA
CCAGGACGGCCGCATCAGCGGCCAGGAGGCCGTCGCCTTCTTCCAGGGCGCCAACCTGCC
GCAGCAAGTCCTCGCCCAGGTATGGATGCACGCCGACAAGAACAAGACCGGCTTCCTCGG
CCGGCCGGAGTTCTTCAACGCGCTGCGCCTCGTCACCGTGGCGCAGAGCGGGCGTCAGCT
CACGCCCGACATAGTGCAGTCGGCGCTGTATGGCCCTGCCGCTGCTAGAATTCCAGCTCC
CAAGATAGCCGGCGGCGGGCAAGCTCCCCCGCAGATGGCTGCGGCGGGCGCTCCCAGGCC
GCAGGTAAATGCCGCGGTGTCACCTGCTCCAGGGCAGGCTGGAGCTCCGCAGCCGCAGAT
GAATGTTGCTGGTGCTCCAAGGCCTCAGGGAAGTGGTATGATGCCGGGCTCTGCTCAAAT
TGGCGGTTCGCAGCAGGTGAACGCCGGAGCCGTGCCAAGACCCCAAGGGGTCAATTCTAT
GATGCCGGCTGCAAGTCAGGGTGGTGCTCTGCAGCCAACTCAGTTTGCAACGCAGAGGGG
AATGCAATCACAGCCGCCTAGCATGGGGTTTAATCAACAGCCTCCTCCTTCGAGTACTGG
TTTCATGAGGCCAACTCAGCCAGGAGCTCCAGCAGCATCACTTCAAGGCCAAGGACCCGG
GATTAATCAAGTACCACTAGGAGGAGGCAGCATGGGAGCACCTGCTGGTTGGCGAGGAGG
CAATGTTGGTTCCGTTGGAGGTCTCCCGCAAGCTACTCCAGGAGCAACTGCTCCACAACA
AGCAACACCGGGTGGATTTGGTCTTACATTGTCTAGTACAATGGGCATGGCTCCCGGACA
ACAGGCACAAGGAACGCCTCCTTCGTCAATGCCACCACAAAGCAACAGTGCTGTATCAGC
TCAAGATTCGAAAGCTTTGGTGCTGTCTGGAAATGGCTCTGCCAGTGGCTTAGGAGCAAG
CAATGACATCTTCTCTGCTCTTACTCAGCCTAAGTCGAATGTATCCACACTTTCATTTCC
GACGAGCATGGCTCCTAATTCATCCAGTTTTATGTCCACACCATCTGGCTCCCAGAACCT
GTCGAATCTAGCTCAGTTTGGTTCTCAACAAGGTATTCCGACAGTGAGTTCTGGTGGCAG
TCAACCTCAACAGACTCATCCCATCACAAAGCCGAGTGTTCCAGCACCAACTGTATCTGG
TGTTTCTGCTGGAGTTTCTAATTCAGCTTCTCAATGGCCAAAAGTTACTCAGTCTGACAT
CCAGAAGTACACTAAAGTCTTTGCGGATGTTGATAGGGACAGAGATGGCAAAATAACTGG
CGCGGAAGCTCGCACCCTGTTCCTCAGTTGGAGACTTCCAAGAGAGATTCTGAAGCAAGT
GTGGGACCTGTCTGACCAAGATAATGATGGCATGCTTTCTTTGAGAGAGTTTTGCATTGC
TCTTTATTTGATGGAGAGGCACCGAGCTGGAACTCCTTTGCCTCCAGCACTTCCTGACTC
TCTTAAATATGATGAGGTACTGCTGCGTGCAACAGGCTTGCCTTCAACAGCATACAACGG
CCCGTCATGGCAACAAAATCAAGGACTGCCACACAAGGGTCCTGGAGCAGCTGGGATGCC
TGCTACTGGTGTGCGGCAACCTTTGCCACCACATTTGCAGGCACAGATGGATGGTGCTAA
CAGACCAGGGCAACCAAGACCTCACATGCCTGGTATGGATAACCATGCAGCACCTCAAGC
AAATAAAGATGACGGAAGTGGAGCGAACTCAGCTGTGCAGGAGGATGCCCCTAAGAAGGT
TGAGGTGGAGAAGCAAGTCCTAGATTCCAGAGAGAAACTAGAATACTACCGTACAAAGAT
GCAAGATCTTGTTCTGTACAAAAGTCGGTGTGACAACAGGCTGAATGAAATCACAGAAAG
GGCATCCTCTGATAAACGTGAGGTGGAATCATTAGCTAAGAAGTATGAAGAGAAATACAA
GCAAGTGGCAGAGTTAGCTTCCAAACTGGCAGTTGAAGAACATGCCTTCCGTGATGTTCA
GGAGAGGAAAGTTGAACTGCATGATGCATTAGTTAAAATGGTACAAGGTGGAAGTGTTGA
TGGTTTGCTTCAGGTTCGAGCTGATCGAATCCAATACCAATTAGAGGAGATGGAGAAAGC
TTTTAGTGAACGGTGCAAGCACTTTGGACTGCAGTTCAAGCCATCTGCATCAGTTGAGCT
TCCTTTTGGTTGGGAACCTGGGAAGCAAGAGGGGGCAATTGAGTGGGATGAAGACTGGGA
CAAATTTGAGGATGAAGGGTTTGGTTTTGTAAAGGACAATGGTACAATTGTTGAAAACCC
AGTTGCTTCTGAAAATGTGAAAGTGCCATCTCTCTGGAATGATATGGATGAGAGCCCTGT
TGCATCTTCGAACGGTCACATCAAGGCTGAGAGACATTACAGAGCTGGTGATCATGCAGC
TGAGAGTGACTTAGGGTATGATTTTGGTGAGGAATCTGTAAGGAGCCCCAGCAGTGCTGG
AAGAAGTGCATCTGGAAGTCCATTTGTGTCTTCAAATTTTGCGATGCATGACTCATCTCC
CAGCAAAAAGGAAACCTACAGTGACCATGGTGGTTCTGAATCCATTTTTGGTGACAAATA
TGCCGATGAAACCTCCTGGAACTTTGATGACCAAGACACTGAATCTGTTTGGGGATCTAA
TGCAATGAACAACGAGTCTGACCATCATGGAAGTGCACACAACTCTTTCTTTGGGTCAGA
TGACTTCGGTGTAAATCCTGTTAGGGTGGGCTCTCCAAGTGGTGCCAGTACCTATGGAAA
GAAGAAAAGTTCATTCTTTGATGATTCTGTTCCAAGTTCACCTGCATACACATCTGGATT
CTCACCAAAATTCAGTGAAAGCCGCGATGATAGCTCCTCATATAACTTAGGAAGGTTCGA
TTCCTTCAGATCCCAGGAGAGCGGATTCTTCCCTCAGGAAAGTCGTTTTTCCAGGTTTGA
CTCCATAAACAACTCCAAAGGTGAGAATGTAACTGGATTCGATTCACCGAAAAGCTCAAC
AAATTTCGGTCGGTTTGATTCTTTTGATGATGCCGATCCATTTGGTTCAAGTGGACCCTT
TAAAGCATCAGGTAGCAGGTCTCCCCCCAAATTCTGATACACCAGGGTACTATTTTTAGT
GAATTCATTTGTCGATACAAGGCTGAATTCTTTTGAGGAAACTCCAACGCGTTGATGCAG
TGGAACCTTTTTGAGTGGGAGGTTGGTCATTCACCTTGTGCGTTTTTCCTGTCCATTATA
CGGTACAAAGGGGACAGGTTTTGGTATATCCTTTGTATTTTGTAAAGTACACCGAGTTTG
TTTTTGTTCATAGTTATCATATCTCTGGAACGGCTGCTGATCATCTGCTGTTTGCCATTT
GTTTCTTGGTTTGTACCATACCAAATGTTACAGTTGGTTTACTAAACTCCCACCATTTTG
TAAGAAACTGAGGACGATTTAGCATGTTTGCGATCTGTATGTGTAAAATCATTTTGGGAT
C