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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0125000-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:1433760:1435293:-1 gene:Os03g0125000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPL5 description:Similar to 50S ribosomal protein L5, chloroplast. (Os03t0125000-01);Similar to 50S ribosomal protein L5, chloroplast. (Os03t0125000-02)
Sequence

ATGGCGGCCACGGCTGTGACCCTGCCGTCCTCGCCGGCCCCCTTCCCCGTCACCACCACC
GCCTCCTCCTCCCGTAACGTCCGCCTCCTCCTCCGCTCCCCGCCTCCTCGCCGAGCCCTC
CGCGTCGCCGCCTCCGCCGCGGCCGACGCGCCACCCAAGCCGGCGCCGCCGCCGACCTCG
CCTTCGGGCATCGTCCTCGTCGACCCCACCGAGGCACAGAAGGTGCACCGCCTCAAGGCT
GTATACGACCAGAAGGTGGTCCCCCTCATCACCGAGGAGTTCGGCTACACCAATGTCCAC
CAGGTGCCCAAGGTTGAGAAGATTGTAGTGAATTGCGGGTTGGGGGCTGAAGCCGGTAAC
TCCAAGGGGCTCGAATCCGCCATGAAGGACCTCGCCATGATCACCGGCCAGTGGCCCGTC
AAGACGAAGGCCAAGAAGTCCGTCGCCAGTTTCAAGATCCGCGAGGGGAACACCATTGGT
ATTGCCGTTACGCTCCGCGGCAGGGTAATGTTCAACTTCCTGGATAGGCTCATCAACCTT
GGGCTTCCTAGGACCATGGACTTCCTTGGTGTCAACCCCAACAGCTTTGATGGCCATGGC
AACTTCACCATAGGCCTTCGTGATCAGGGCGTGTTCCCGGAGATCCCGTACGAGGTCGGT
GGGAAGAAGAATGGAATGGACGTCTGCATCGTCACCACCGCGAAGACCGACAACGAGGCT
CTCAGGCTGCTCACCCTCCTTGGCATGCCGTTCGCGGAGCACATCAAGTCCTCCGTGGTG
ATCCGGAAGAAGAGGTTGAAGCGCCACCACTTCATGAGCAAGGGCAGGGGAAGACGGTGA

Peptide Sequence

PEP ID

Os03t0125000-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:1433760:1435293:-1 gene:Os03g0125000 transcript:Os03t0125000-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPL5 description:Similar to 50S ribosomal protein L5, chloroplast. (Os03t0125000-01);Similar to 50S ribosomal protein L5, chloroplast. (Os03t0125000-02)
Sequence

MAATAVTLPSSPAPFPVTTTASSSRNVRLLLRSPPPRRALRVAASAAADAPPKPAPPPTS
PSGIVLVDPTEAQKVHRLKAVYDQKVVPLITEEFGYTNVHQVPKVEKIVVNCGLGAEAGN
SKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVTLRGRVMFNFLDRLINL
GLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKNGMDVCIVTTAKTDNEA
LRLLTLLGMPFAEHIKSSVVIRKKRLKRHHFMSKGRGRR

Transcript Sequence

Transcript ID

Os03t0125000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:1433760:1435293:-1 gene:Os03g0125000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPL5 description:Similar to 50S ribosomal protein L5, chloroplast. (Os03t0125000-01);Similar to 50S ribosomal protein L5, chloroplast. (Os03t0125000-02)
Sequence

CCGCGCACGCTCCAATGGCGGCCACGGCTGTGACCCTGCCGTCCTCGCCGGCCCCCTTCC
CCGTCACCACCACCGCCTCCTCCTCCCGTAACGTCCGCCTCCTCCTCCGCTCCCCGCCTC
CTCGCCGAGCCCTCCGCGTCGCCGCCTCCGCCGCGGCCGACGCGCCACCCAAGCCGGCGC
CGCCGCCGACCTCGCCTTCGGGCATCGTCCTCGTCGACCCCACCGAGGCACAGAAGGTGC
ACCGCCTCAAGGCTGTATACGACCAGAAGGTGGTCCCCCTCATCACCGAGGAGTTCGGCT
ACACCAATGTCCACCAGGTGCCCAAGGTTGAGAAGATTGTAGTGAATTGCGGGTTGGGGG
CTGAAGCCGGTAACTCCAAGGGGCTCGAATCCGCCATGAAGGACCTCGCCATGATCACCG
GCCAGTGGCCCGTCAAGACGAAGGCCAAGAAGTCCGTCGCCAGTTTCAAGATCCGCGAGG
GGAACACCATTGGTATTGCCGTTACGCTCCGCGGCAGGGTAATGTTCAACTTCCTGGATA
GGCTCATCAACCTTGGGCTTCCTAGGACCATGGACTTCCTTGGTGTCAACCCCAACAGCT
TTGATGGCCATGGCAACTTCACCATAGGCCTTCGTGATCAGGGCGTGTTCCCGGAGATCC
CGTACGAGGTCGGTGGGAAGAAGAATGGAATGGACGTCTGCATCGTCACCACCGCGAAGA
CCGACAACGAGGCTCTCAGGCTGCTCACCCTCCTTGGCATGCCGTTCGCGGAGCACATCA
AGTCCTCCGTGGTGATCCGGAAGAAGAGGTTGAAGCGCCACCACTTCATGAGCAAGGGCA
GGGGAAGACGGTGATTGCAAACCGCTGCCTAGGCACGTTGAGCTTTGCTTCTCACTTTGT
CAATTGTCATTGTTTTTGCAAAGTTTCGTTTAGAAGTTTGATGATTTTGTTATCTTGTCA
CGTGCTGTATTTACTGTCAGAAGACAAAATGAAAAGGCTTTGCTTTGGTC