Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0124900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:1430583:1433728:1 gene:Os03g0124900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os03t0124900-01)
Sequence

ATGGCCAAAAAAACAATACTGCAGGTGGTTTGCGCGGTGGCGCTGGTGGCGCTGTGCGCG
TGCGGCGTCGCGGCGTCACCGTCGTCGCCGGCGGGAGCGGGGTGCCGGAAGCACGTCGCG
AGGATCACGGAGTACGGCGGCGTCGGGGACGGGAGGAGGTCCAACACGGCGGCGTTCGCC
AAGGCGGTGGCGGACCTGTCGCTGCGCGCCGGCGACGGCGGCGCGGCGCTGGTGGTGCCG
AAGGGGAAGTGGCTGACGGGGCCCTTCAACCTCACCAGCCACTTCACCCTCTTCCTCGAC
CACGGCGCCGAGATCCTCGCGTCTCAGAACTTGGAAGATTGGCCTCTGATAGCTCCTCTG
CCATCCTACGGAAGAGGAAGGGACGAACCAGGCCCAAGATACAGCAATTTCATTGCTGGA
TCCAATCTCACAGATGTCATCATCACTGGTAGGAATGGAACGATCAACGGCCAGGGCCAA
GTCTGGTGGGACAAGTTCCACGCCAAGGAACTCACCTACACTCGCGGTTACCTGCTCGAG
CTCCTCTACTCTAACAATATCATCATCTCTAATGTCACCTTCGTCGACTCGCCGTCATGG
AATCTCCATCCCACCTACTGCACCAATGTGACCATCAGCGGCATCACCATTCTAGCACCT
CTCAACTCGCCCAACACCGATGGAATCGACCCAGATTCTTCCTCCCATGTCAAGATCGAG
GACAGCTACATCGTGTCCGGCGACGACTGCATCGCCGTGAAGAGCGGCTGGGACCAGTAC
GGCATCAAGTTCAACATGCCGAGCCAGCACATCCTCATCAGGAGGCTCACCTGCATCTCC
CCGACGAGCGCCATGATCGCGCTCGGCAGCGAGATGTCCGGCGGCATCCGCGACGTGCGC
GCCGTGGACAACGTCGCCATCGACACCGAGTCGGCCGTCAGGATCAAGTCCGGCGTGGGG
CGCGGCGGCTACGTCAAGGACGTGTTCGTCCGCGGCCTCAGCCTCCACACCATGAAGTGG
GTGTTCTGGATGACCGGCAACTACGGCCAGCACCCGGACAACTCCTCCGACCCCAACGCT
CTGCCGGAGGTCACCGGCATCAACTACAGCGACGTGTTCGCGGAGAACGTCACCATGGCC
GGCAGGATGGAGGGGATTCCCAACGACCCCTACACTGGCATCTGCATGTCCAACGTCACC
GCGCAGCTCGCGCCGGACGCCAAGAAGCTGCAATGGAACTGCACCGATGTCAAGGGTGTC
GCCTCCGACGTCTCGCCGGTGCCGTGCCCGGAGCTCGGGGCGGCGGGCAAGCCATGCGCC
TTCCCTGAAGAAGAGCTCGTCATCGGTCCGCCTGAATTGCCAACGTGTAGCTACTGA

Peptide Sequence

PEP ID

Os03t0124900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:1430583:1433728:1 gene:Os03g0124900 transcript:Os03t0124900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os03t0124900-01)
Sequence

MAKKTILQVVCAVALVALCACGVAASPSSPAGAGCRKHVARITEYGGVGDGRRSNTAAFA
KAVADLSLRAGDGGAALVVPKGKWLTGPFNLTSHFTLFLDHGAEILASQNLEDWPLIAPL
PSYGRGRDEPGPRYSNFIAGSNLTDVIITGRNGTINGQGQVWWDKFHAKELTYTRGYLLE
LLYSNNIIISNVTFVDSPSWNLHPTYCTNVTISGITILAPLNSPNTDGIDPDSSSHVKIE
DSYIVSGDDCIAVKSGWDQYGIKFNMPSQHILIRRLTCISPTSAMIALGSEMSGGIRDVR
AVDNVAIDTESAVRIKSGVGRGGYVKDVFVRGLSLHTMKWVFWMTGNYGQHPDNSSDPNA
LPEVTGINYSDVFAENVTMAGRMEGIPNDPYTGICMSNVTAQLAPDAKKLQWNCTDVKGV
ASDVSPVPCPELGAAGKPCAFPEEELVIGPPELPTCSY

Transcript Sequence

Transcript ID

Os03t0124900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:1430583:1433728:1 gene:Os03g0124900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os03t0124900-01)
Sequence

GTTGCATTTCTCGTCCTGATTTGCGTCCTGCAGCTCTCTCTCATCACAGTTTCGCAATGG
CCAAAAAAACAATACTGCAGGTGGTTTGCGCGGTGGCGCTGGTGGCGCTGTGCGCGTGCG
GCGTCGCGGCGTCACCGTCGTCGCCGGCGGGAGCGGGGTGCCGGAAGCACGTCGCGAGGA
TCACGGAGTACGGCGGCGTCGGGGACGGGAGGAGGTCCAACACGGCGGCGTTCGCCAAGG
CGGTGGCGGACCTGTCGCTGCGCGCCGGCGACGGCGGCGCGGCGCTGGTGGTGCCGAAGG
GGAAGTGGCTGACGGGGCCCTTCAACCTCACCAGCCACTTCACCCTCTTCCTCGACCACG
GCGCCGAGATCCTCGCGTCTCAGAACTTGGAAGATTGGCCTCTGATAGCTCCTCTGCCAT
CCTACGGAAGAGGAAGGGACGAACCAGGCCCAAGATACAGCAATTTCATTGCTGGATCCA
ATCTCACAGATGTCATCATCACTGGTAGGAATGGAACGATCAACGGCCAGGGCCAAGTCT
GGTGGGACAAGTTCCACGCCAAGGAACTCACCTACACTCGCGGTTACCTGCTCGAGCTCC
TCTACTCTAACAATATCATCATCTCTAATGTCACCTTCGTCGACTCGCCGTCATGGAATC
TCCATCCCACCTACTGCACCAATGTGACCATCAGCGGCATCACCATTCTAGCACCTCTCA
ACTCGCCCAACACCGATGGAATCGACCCAGATTCTTCCTCCCATGTCAAGATCGAGGACA
GCTACATCGTGTCCGGCGACGACTGCATCGCCGTGAAGAGCGGCTGGGACCAGTACGGCA
TCAAGTTCAACATGCCGAGCCAGCACATCCTCATCAGGAGGCTCACCTGCATCTCCCCGA
CGAGCGCCATGATCGCGCTCGGCAGCGAGATGTCCGGCGGCATCCGCGACGTGCGCGCCG
TGGACAACGTCGCCATCGACACCGAGTCGGCCGTCAGGATCAAGTCCGGCGTGGGGCGCG
GCGGCTACGTCAAGGACGTGTTCGTCCGCGGCCTCAGCCTCCACACCATGAAGTGGGTGT
TCTGGATGACCGGCAACTACGGCCAGCACCCGGACAACTCCTCCGACCCCAACGCTCTGC
CGGAGGTCACCGGCATCAACTACAGCGACGTGTTCGCGGAGAACGTCACCATGGCCGGCA
GGATGGAGGGGATTCCCAACGACCCCTACACTGGCATCTGCATGTCCAACGTCACCGCGC
AGCTCGCGCCGGACGCCAAGAAGCTGCAATGGAACTGCACCGATGTCAAGGGTGTCGCCT
CCGACGTCTCGCCGGTGCCGTGCCCGGAGCTCGGGGCGGCGGGCAAGCCATGCGCCTTCC
CTGAAGAAGAGCTCGTCATCGGTCCGCCTGAATTGCCAACGTGTAGCTACTGAAATACTG
ATATAGGATGATAGTATGGTGTGGGTAATGGCCTGGGCTATGAGATGCTTGGGACCAAAG
AGATATATATGATGTGGTTTAGTGAGTAAAGTTAAGCAGTTTGAAAATGCTGCCGGATAA
TCTCTTTACACCCAAT