Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0119700-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:1076187:1078246:1 gene:Os03g0119700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0119700-01);Hypothetical conserved gene. (Os03t0119700-02)
Sequence

CACTCTCCACTCTCCTTCTCTATGTTCCGCCTCCCGCCGCTCCACCGCGCCGCCGCCGTC
TTCCTCCGCCTCCGCCTCGCCTCTCCCCGCGCAACCTTCTCCTCCAAACCCGCCAATCCC
CGCACCAGCAGCGTTGCCTCCGCCGCCGCCCCCGCCGCCGCCGCGGTCTCAGATGCGATC
GTTCGCCTCGTCGCGGCCGGCGGCAGGAGCCTCGAGGCCGACCTTGACCGCCTCGACCCC
GCCCTCTCCCACCCCATCGTGTCGGCCACCCTCCGCGCGCTCACCGACCGCGGCCTCCCC
GCGGCCCGCTTCTTCGACTGGCTCGCGCTCCGCAGGGGCTTCTCCCCGAGCGCCCACGCC
CACAACCTGCTCGTCGAGAATGCCGGCAGCCTCGCGGACTATCGGGCCATGTCCCGCGCC
ATGGAGAGCATGTCTACGCGGCGGGTTCCCCTGACCGAACGGGCGTTCGCCTTCTTGAAC
ACGTCCCAGGGCAGCGCCAGGGATACGGCGATAGCGATTCTAGCGACGCTGGATGAAGTC
GGGGGCCCTTGCCGTGCGTCCGGCGTGTTCTCGCTCGTCAAGGCGCTAGCTTCGATCGGT
GAGTTCGACGCGGCGATGTCTGTGATCCAGGAGACGGCGAGGGGGGCACGTTACTACAAC
GCCCTCATCGCCGTGAAGTGCAAAACTGGGGACTTCCATGGCGCCCGCGAGGTGTTCGAC
GAAATGAGGAGGTCGGGCTTCGGCCCGAATTCTAACTCCTGGAACTACCTCCTCGGGTGC
CTGCTGAAGAACGGCAGGGTTGCAGAAGCTTGTGAGCTTGTTGAGGCCATGGAGAGGTCT
GAACACAACGACATCCCGAACTCGCTGACCTACGAGATTCTAGCATACCATGCGTGCAAA
GCGGGGAGGATGGATTCAGCCATGCGGATTCTTGATCAGATGTTCTTGGAGAAATTGACA
CCGAGGATTACGATTCACACAGCCTTCATCAAGGGGTACTTATACGCTGGAAGAATAGAT
GATGCTTGCAGATATGTCAGTGCTATGAGCACCAGGGACAGGCGCTCAGTGAACAGGAAC
TACAGCCTGCTAGCCAAGCTACTGTGTAAGGCAGGGATGATCGTTGATGCAGGAAGAATT
CTGTATGAATTGATGGAGAAGGAGGCACTCTTGCCTGACCATTCTGCTTACATTAGAGTG
ATCAAAGATTTGCACAAGATTGGCAAGGGAGATCTGGCTGCTGAATTGAACTTGATTTTG
CAGAAGCTCAGTGTACATGCAGAATCAGCGGGATGA

Peptide Sequence

PEP ID

Os03t0119700-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:1076187:1078246:1 gene:Os03g0119700 transcript:Os03t0119700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0119700-01);Hypothetical conserved gene. (Os03t0119700-02)
Sequence

HSPLSFSMFRLPPLHRAAAVFLRLRLASPRATFSSKPANPRTSSVASAAAPAAAAVSDAI
VRLVAAGGRSLEADLDRLDPALSHPIVSATLRALTDRGLPAARFFDWLALRRGFSPSAHA
HNLLVENAGSLADYRAMSRAMESMSTRRVPLTERAFAFLNTSQGSARDTAIAILATLDEV
GGPCRASGVFSLVKALASIGEFDAAMSVIQETARGARYYNALIAVKCKTGDFHGAREVFD
EMRRSGFGPNSNSWNYLLGCLLKNGRVAEACELVEAMERSEHNDIPNSLTYEILAYHACK
AGRMDSAMRILDQMFLEKLTPRITIHTAFIKGYLYAGRIDDACRYVSAMSTRDRRSVNRN
YSLLAKLLCKAGMIVDAGRILYELMEKEALLPDHSAYIRVIKDLHKIGKGDLAAELNLIL
QKLSVHAESAG

Transcript Sequence

Transcript ID

Os03t0119700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:1076187:1078246:1 gene:Os03g0119700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0119700-01);Hypothetical conserved gene. (Os03t0119700-02)
Sequence

CACTCTCCACTCTCCTTCTCTATGTTCCGCCTCCCGCCGCTCCACCGCGCCGCCGCCGTC
TTCCTCCGCCTCCGCCTCGCCTCTCCCCGCGCAACCTTCTCCTCCAAACCCGCCAATCCC
CGCACCAGCAGCGTTGCCTCCGCCGCCGCCCCCGCCGCCGCCGCGGTCTCAGATGCGATC
GTTCGCCTCGTCGCGGCCGGCGGCAGGAGCCTCGAGGCCGACCTTGACCGCCTCGACCCC
GCCCTCTCCCACCCCATCGTGTCGGCCACCCTCCGCGCGCTCACCGACCGCGGCCTCCCC
GCGGCCCGCTTCTTCGACTGGCTCGCGCTCCGCAGGGGCTTCTCCCCGAGCGCCCACGCC
CACAACCTGCTCGTCGAGAATGCCGGCAGCCTCGCGGACTATCGGGCCATGTCCCGCGCC
ATGGAGAGCATGTCTACGCGGCGGGTTCCCCTGACCGAACGGGCGTTCGCCTTCTTGAAC
ACGTCCCAGGGCAGCGCCAGGGATACGGCGATAGCGATTCTAGCGACGCTGGATGAAGTC
GGGGGCCCTTGCCGTGCGTCCGGCGTGTTCTCGCTCGTCAAGGCGCTAGCTTCGATCGGT
GAGTTCGACGCGGCGATGTCTGTGATCCAGGAGACGGCGAGGGGGGCACGTTACTACAAC
GCCCTCATCGCCGTGAAGTGCAAAACTGGGGACTTCCATGGCGCCCGCGAGGTGTTCGAC
GAAATGAGGAGGTCGGGCTTCGGCCCGAATTCTAACTCCTGGAACTACCTCCTCGGGTGC
CTGCTGAAGAACGGCAGGGTTGCAGAAGCTTGTGAGCTTGTTGAGGCCATGGAGAGGTCT
GAACACAACGACATCCCGAACTCGCTGACCTACGAGATTCTAGCATACCATGCGTGCAAA
GCGGGGAGGATGGATTCAGCCATGCGGATTCTTGATCAGATGTTCTTGGAGAAATTGACA
CCGAGGATTACGATTCACACAGCCTTCATCAAGGGGTACTTATACGCTGGAAGAATAGAT
GATGCTTGCAGATATGTCAGTGCTATGAGCACCAGGGACAGGCGCTCAGTGAACAGGAAC
TACAGCCTGCTAGCCAAGCTACTGTGTAAGGCAGGGATGATCGTTGATGCAGGAAGAATT
CTGTATGAATTGATGGAGAAGGAGGCACTCTTGCCTGACCATTCTGCTTACATTAGAGTG
ATCAAAGATTTGCACAAGATTGGCAAGGGAGATCTGGCTGCTGAATTGAACTTGATTTTG
CAGAAGCTCAGTGTACATGCAGAATCAGCGGGATGAAATTTCAAGTAGTCTTGGAGCAAG
TGATGAGTCTTGTCTTGCGTCATTTCTGTCCTCTCTCTATGATGTGGATGTCAGAAGGAC
TTGATGTAAATCAGAGTCACCTGGCTGATAAAGAGGAGAGCAGACATGAATCATGCACAA
ATGGTGCAAGCTGTTGTCATGTAGAGAGAGGACCATGTGATTTCCTGCAGAAAAAAAAAG
ACAGTCACTAGGCAAAGCCAAACAATCGTACCACTGGATTGCCACATTGCTTCCTTGGAT
TTTAACTCCAGTTTCGGTAGTTTTTTCCTACTGAAGGTAGACAGAATTTGGTACTTCTAT
GTGCAAATTCTTTGATAGGGACATTACTTATCTACAGGATTGCAGTACAAATGAAGATGA
GTGGAACAAGTACTTGAATATGCAAATTCTTTGATAGGAAAATTACTTGTGTTCCATACT
GCCATTACATTCAGCCTGTAGATGGTTAAGGACAGGTGAACATTTGTGTGACACTGTTTT
CCTTTTCCATCACTGATTAGAATAGTGAATCTGTGTTGAAGTGTAATGTGGTAGGAAATC
ACATTCACAGGCGAAATTTCTGCTCGAAAAATAATTCACAAGGAGGCACTCTTGCCTGAC
CATTCTGCTTACACTAGAGTTATCAAAGATTTGCACAAGATTGGCAAGGGCGATCTGGAT
GCTGAATTGAAGTTGATTTTTCAGAAGCTCACTGTACATGCAGAATCAGCACAATGAATC
TTGTCTTGATGTCCTCTCCC