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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0117100-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:958129:960004:-1 gene:Os03g0117100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PEROXIN 11-1 description:Peroxisomal protein, Response to salt and low nitrogen stresses (Os03t0117100-01);Peroxisomal biogenesis factor 11 family protein. (Os03t0117100-02)
Sequence

ATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTTGTTCTGTACTTGAACAAA
GCCGAGGCCAGGGACAAGATATGCAGGGCGATCCAATACGGCTCGAAGTTTATCAGTAAC
GGGCAGCCTGGCACGGCACAGGATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTC
CGGCTTCTCAAGTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACT
CCTCTTACACTGGTCTTGCTTGGGAAGTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTC
CTGGACCAATTTGTATGGTTGGGAAGAACAGGGATATACAAGAACAAGGAGCGCACAGAC
CGGATTGTAAGGATATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTT
GAGCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGCTGAGG
GATACTGACAAATATGAGAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGG
CTGCTAGCACTGGTGAAGGCGGCCATGGATGTTGTGGTGGCCGTAGGGCTTCTTCAGCTG
TCACCCAAGAAGATCACTCCAAGGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATT
TCCTGCTATCAGCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGA

Peptide Sequence

PEP ID

Os03t0117100-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:958129:960004:-1 gene:Os03g0117100 transcript:Os03t0117100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PEROXIN 11-1 description:Peroxisomal protein, Response to salt and low nitrogen stresses (Os03t0117100-01);Peroxisomal biogenesis factor 11 family protein. (Os03t0117100-02)
Sequence

MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVF
RLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTD
RIVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYENDQYKSKMKQSDER
LLALVKAAMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQQLPSRAPAIKVKA

Transcript Sequence

Transcript ID

Os03t0117100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:958129:960004:-1 gene:Os03g0117100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PEROXIN 11-1 description:Peroxisomal protein, Response to salt and low nitrogen stresses (Os03t0117100-01);Peroxisomal biogenesis factor 11 family protein. (Os03t0117100-02)
Sequence

ATCCTACTCCCTGGTTAGCAATAGCAAGGGTAGGAAGATGAGCACGTTAGATGCCACGCG
AGCAGAGCTCGGCCTTGTTGTTCTGTACTTGAACAAAGCCGAGGCCAGGGACAAGATATG
CAGGGCGATCCAATACGGCTCGAAGTTTATCAGTAACGGGCAGCCTGGCACGGCACAGGA
TGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGTGGGTCAATGA
TCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGG
GAAGTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGTTGGG
AAGAACAGGGATATACAAGAACAAGGAGCGCACAGACCGGATTGTAAGGATATCCCTCTA
CTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGCTTGGAGAGCTTAAGAGGCT
ATCAAAATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGAATGA
CCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCACTGGTGAAGGCGGC
CATGGATGTTGTGGTGGCCGTAGGGCTTCTTCAGCTGTCACCCAAGAAGATCACTCCAAG
GGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGCAACTTCCATC
TCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTTGCCGTTGTAGCCCAAAGGGA
GTCCATCACTGGAATCTGCAGACGTAATTCTTAAGCATGGATTGTGAGATAATCTGTCTA
TGATAATCAGTATAGAATACTTTCAGTTGTACGTATGGTTTATGGCTTCACACAATACCC
TCCTGAACTGTAATGAACATGGTTTATGTGTTCATGCATGTCTTCTACTTTGTACTCCAA
CATGGCTGCCAAATTTATACTCATTGGAGCATGTATGCCCACT