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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0116400-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:932241:934775:1 gene:Os03g0116400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 7, RHOMBOID 7 description:Similar to Membrane protein. (Os03t0116400-01)
Sequence

ATGGCGACGTCGCACGCGGACGTGGAGAAGGGGGCGAGGAGGAAGGAGGTGGGGAAGGTG
CCGTCGCCGCTGTACCCGCAGCACGAGGGGGAGAGGGAGTGGGTGCCGTGGATCGTCCCG
TCGTTCCTCGTCGCCAACATCGTCGTCTTCGTCCTCACCATGTACGCCAACAACTGCCCC
CTCCACACCCCGCCTCGCAGCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTCTCCTTC
CAGCCTCTCCACGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACGCTACAGAAGATGGGA
GCACTTGTGTGGGACAAGGTCGTGCACGAGCACCAGGGCTATCGCCTCATCACCTCCATC
TGGCTGCATGCCGGTGTTCTGCACCTGGTCGCCAACATGCTCAGCCTCATCTTCATCGGC
CTGCGCCTTGAGCAGCAGTTCGGATACGTACGAATTGGAGCGATCTACCTCCTGTCTGGC
CTGGGCGGCAGCGTCCTGTCCTCTCTGTTCATCAGAAACCACATCTCGGTTGGTGCTTCA
GGTGCTCTCTTTGGACTCCTCGGAGCCATGCTCTCGGAGCTTCTCACCAACTGGACCATT
TACACCAACAAGGTCGCGGCCGTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCG
CTCGGCATCCTCCCACACGTGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTC
CTGCTCGGATTCGTGCTGCTGATGCGGCCGCATTTCGGCTGGATGGAGCGCTACAGCCTC
CCCTCCGGCAGCCCGTGCAGCTCCAAGAAGTACCTCGTCTACCAGTGGATCCTGCTTGCC
ATCGCCACTGCCCTCGTCATTGTCGGATTCGCGGTTGGTATGACCATGCTCTTCCGCGGG
GAGAACGCCAACGACAGCTGCCACTGGTGTCACTACCTCAGCTGTGTACCAACCTCCAGA
TGGACCTGCTCGAACTGA

Peptide Sequence

PEP ID

Os03t0116400-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:932241:934775:1 gene:Os03g0116400 transcript:Os03t0116400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 7, RHOMBOID 7 description:Similar to Membrane protein. (Os03t0116400-01)
Sequence

MATSHADVEKGARRKEVGKVPSPLYPQHEGEREWVPWIVPSFLVANIVVFVLTMYANNCP
LHTPPRSGKCIARFLGRFSFQPLHENPLLGPSSATLQKMGALVWDKVVHEHQGYRLITSI
WLHAGVLHLVANMLSLIFIGLRLEQQFGYVRIGAIYLLSGLGGSVLSSLFIRNHISVGAS
GALFGLLGAMLSELLTNWTIYTNKVAAVITLLFVIAVNLALGILPHVNNFAHIGGFLTGF
LLGFVLLMRPHFGWMERYSLPSGSPCSSKKYLVYQWILLAIATALVIVGFAVGMTMLFRG
ENANDSCHWCHYLSCVPTSRWTCSN

Transcript Sequence

Transcript ID

Os03t0116400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:932241:934775:1 gene:Os03g0116400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 7, RHOMBOID 7 description:Similar to Membrane protein. (Os03t0116400-01)
Sequence

GTCCACCGCCTCACTCCATCCACCGCACCACCACCACTACCCTGCACCTCGATCAATTGA
ACGCGAGCAAGGAAAGAGAGAGAGCGAGAAAGAGAGCGGCAATGGCGACGTCGCACGCGG
ACGTGGAGAAGGGGGCGAGGAGGAAGGAGGTGGGGAAGGTGCCGTCGCCGCTGTACCCGC
AGCACGAGGGGGAGAGGGAGTGGGTGCCGTGGATCGTCCCGTCGTTCCTCGTCGCCAACA
TCGTCGTCTTCGTCCTCACCATGTACGCCAACAACTGCCCCCTCCACACCCCGCCTCGCA
GCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACC
CGCTCCTCGGCCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGTGGGACAAGG
TCGTGCACGAGCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTC
TGCACCTGGTCGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGT
TCGGATACGTACGAATTGGAGCGATCTACCTCCTGTCTGGCCTGGGCGGCAGCGTCCTGT
CCTCTCTGTTCATCAGAAACCACATCTCGGTTGGTGCTTCAGGTGCTCTCTTTGGACTCC
TCGGAGCCATGCTCTCGGAGCTTCTCACCAACTGGACCATTTACACCAACAAGGTCGCGG
CCGTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCGCTCGGCATCCTCCCACACG
TGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCGTGCTGC
TGATGCGGCCGCATTTCGGCTGGATGGAGCGCTACAGCCTCCCCTCCGGCAGCCCGTGCA
GCTCCAAGAAGTACCTCGTCTACCAGTGGATCCTGCTTGCCATCGCCACTGCCCTCGTCA
TTGTCGGATTCGCGGTTGGTATGACCATGCTCTTCCGCGGGGAGAACGCCAACGACAGCT
GCCACTGGTGTCACTACCTCAGCTGTGTACCAACCTCCAGATGGACCTGCTCGAACTGAG
AAATACAAGGAGGCCATGAACAAATTTTCTCTGTACTTTTTTTCTTTTTGCGTAATCCTG
TATGATGCTGCAAACACATATTCTGTTTATCTGTAGATAGATTAAAGAAGGATTCTTGAT
CGATCGATCTCATACTGTAGGCAGGCTCGTCGGGGTCTTCCACTCTTCCTATCTCTTGTA
CAATTGATTCATTCTTTGTATTGCAATTATTGAGGCTTGGAATCTCTTCTGTCCCTGCAT
CACTTCTTCCAAATTAAAACATATCTTTGAACCTGTATGGACAAGC