Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0113800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:771445:776984:1 gene:Os03g0113800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os03t0113800-01)
Sequence

ATGGAGGATTCTGCGCGGCCGACGCCCGCTGACTCCGGGGAGCTCCCCAACGGCGCGGGG
ATGGCGGAGGATGCGGTGGTGGCGCCCGACGCGGGGGAGGCTCCGGAGGAGGGGGAGGAA
TCGGGAATTGCGAACGATTCGGAGACGAACGCGGCTCTGGGCGCAGAGGGCGAGCCCTCG
CGGGCGCTCACCATGCGGGAGCTGCTTGGGGAGCTCAAGGACAGCGGGGAGCCCTCGTCG
GGGAGATCCACGCTTTCGGAGGGCAATGGGATCGGATCTGCCGGTGCGGAGCGCGCCAGC
CAGGACAGCCTACAGTTCTCATCCCATCATGATGTTGCCATGGACTTGATAAATAGTGTC
ACTGGAGTTGACGAGGAAGGTCGTTCTCGTCAACGCATTCTTTCCTTTGCTGCCAAAAGA
TATGTTAGTGCCATCGAAAGAAATCCGGAAGATCCAGATGCATACTATAATTGGGCCCTA
GTCCTCCAGGAAAGTGCAGATAATGTGGATCCTGATTCTAGTTCTTCAAAAGATTCATTA
CTCGAGGAGGCTTGCAAAAAGTACGCTGAAGCTACACGACTCTGCCCAACGCTATATGAT
GCATATTACAACTGGGCTATTGCTATTGCTGATCGAGCCAAAATGCGTGGACGTACCAAA
GAGGCTGAAGAACTCTGGAAGCAGGCTATAATGAATTATGACAAGGCAGTCCAGTTAAAT
TGGAACAGCCCCCAGGCCCTCAACAACTGGGGTTTGGGACTACAGGAGCTGAGCGCAATT
GTTCCAGCCCGAGATAAACAAACAATCATAAAAACAGCTATAAGCAAGTTTCGATCTGCA
ATCCAGTTGCAATTTGATTTCCACCGGGCTATTTACAATCTTGGAACTGTCCTGTATGGG
TTAGCAGAGGATACAATGAGGTCTGCAGGTCCAGATGTCTCTCCAAATGACTTGTACAGT
CAGTCCGCCATTTATGTCGCAGCTGCTCATGCATTGAAGCCAAATTATTCAGTTTATCGC
AGTGCTCTACGTCTGGTTCGATCAATGCTACCTTTACCATATCTAAAAGCTGGGTATCTA
ACTGCTCCTCCAGCAGACAACACCATTGCACCACATAAACATTGGGAAAGGTCAGAATTT
GTCTTAAACCATGAGGGACTCCAGCAGGTCGATGCCTCTGAAAGCCCTTCTAGCAAACCC
CTTGGACATATGGGGAGAAGCAAAAAATATATTAAAGTAGCTGTTGAAGATATCGTTTCA
GTGTCTGCATGCTCCGATCTAACACTGCCACCTGGTGCTGGCCTTTGTATAGAAACAATT
CACGGGCCTTTGTTCTTGGTTGCTGATACCTGGGAGTCTCTTGATGGTTGGTTAGATGCT
ATACGCTTAGTGTACACCATATTTGCACGAGGAAAAAGTGATGTATTGGCAGGTATCATT
ACTGGTTGA

Peptide Sequence

PEP ID

Os03t0113800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:771445:776984:1 gene:Os03g0113800 transcript:Os03t0113800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os03t0113800-01)
Sequence

MEDSARPTPADSGELPNGAGMAEDAVVAPDAGEAPEEGEESGIANDSETNAALGAEGEPS
RALTMRELLGELKDSGEPSSGRSTLSEGNGIGSAGAERASQDSLQFSSHHDVAMDLINSV
TGVDEEGRSRQRILSFAAKRYVSAIERNPEDPDAYYNWALVLQESADNVDPDSSSSKDSL
LEEACKKYAEATRLCPTLYDAYYNWAIAIADRAKMRGRTKEAEELWKQAIMNYDKAVQLN
WNSPQALNNWGLGLQELSAIVPARDKQTIIKTAISKFRSAIQLQFDFHRAIYNLGTVLYG
LAEDTMRSAGPDVSPNDLYSQSAIYVAAAHALKPNYSVYRSALRLVRSMLPLPYLKAGYL
TAPPADNTIAPHKHWERSEFVLNHEGLQQVDASESPSSKPLGHMGRSKKYIKVAVEDIVS
VSACSDLTLPPGAGLCIETIHGPLFLVADTWESLDGWLDAIRLVYTIFARGKSDVLAGII
TG

Transcript Sequence

Transcript ID

Os03t0113800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:771445:776984:1 gene:Os03g0113800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os03t0113800-01)
Sequence

GAGCGACCACTAGTGGCTCGGCTCGGCTCGCGTCCTCTTCCTCCTCGCATCGCATCGCAT
CGCATCGCCCAGATCTCCCGCCGAGTTAGATCCTAATCCGAGGAGAGACTCGAGTCATGG
AGGATTCTGCGCGGCCGACGCCCGCTGACTCCGGGGAGCTCCCCAACGGCGCGGGGATGG
CGGAGGATGCGGTGGTGGCGCCCGACGCGGGGGAGGCTCCGGAGGAGGGGGAGGAATCGG
GAATTGCGAACGATTCGGAGACGAACGCGGCTCTGGGCGCAGAGGGCGAGCCCTCGCGGG
CGCTCACCATGCGGGAGCTGCTTGGGGAGCTCAAGGACAGCGGGGAGCCCTCGTCGGGGA
GATCCACGCTTTCGGAGGGCAATGGGATCGGATCTGCCGGTGCGGAGCGCGCCAGCCAGG
ACAGCCTACAGTTCTCATCCCATCATGATGTTGCCATGGACTTGATAAATAGTGTCACTG
GAGTTGACGAGGAAGGTCGTTCTCGTCAACGCATTCTTTCCTTTGCTGCCAAAAGATATG
TTAGTGCCATCGAAAGAAATCCGGAAGATCCAGATGCATACTATAATTGGGCCCTAGTCC
TCCAGGAAAGTGCAGATAATGTGGATCCTGATTCTAGTTCTTCAAAAGATTCATTACTCG
AGGAGGCTTGCAAAAAGTACGCTGAAGCTACACGACTCTGCCCAACGCTATATGATGCAT
ATTACAACTGGGCTATTGCTATTGCTGATCGAGCCAAAATGCGTGGACGTACCAAAGAGG
CTGAAGAACTCTGGAAGCAGGCTATAATGAATTATGACAAGGCAGTCCAGTTAAATTGGA
ACAGCCCCCAGGCCCTCAACAACTGGGGTTTGGGACTACAGGAGCTGAGCGCAATTGTTC
CAGCCCGAGATAAACAAACAATCATAAAAACAGCTATAAGCAAGTTTCGATCTGCAATCC
AGTTGCAATTTGATTTCCACCGGGCTATTTACAATCTTGGAACTGTCCTGTATGGGTTAG
CAGAGGATACAATGAGGTCTGCAGGTCCAGATGTCTCTCCAAATGACTTGTACAGTCAGT
CCGCCATTTATGTCGCAGCTGCTCATGCATTGAAGCCAAATTATTCAGTTTATCGCAGTG
CTCTACGTCTGGTTCGATCAATGCTACCTTTACCATATCTAAAAGCTGGGTATCTAACTG
CTCCTCCAGCAGACAACACCATTGCACCACATAAACATTGGGAAAGGTCAGAATTTGTCT
TAAACCATGAGGGACTCCAGCAGGTCGATGCCTCTGAAAGCCCTTCTAGCAAACCCCTTG
GACATATGGGGAGAAGCAAAAAATATATTAAAGTAGCTGTTGAAGATATCGTTTCAGTGT
CTGCATGCTCCGATCTAACACTGCCACCTGGTGCTGGCCTTTGTATAGAAACAATTCACG
GGCCTTTGTTCTTGGTTGCTGATACCTGGGAGTCTCTTGATGGTTGGTTAGATGCTATAC
GCTTAGTGTACACCATATTTGCACGAGGAAAAAGTGATGTATTGGCAGGTATCATTACTG
GTTGATCTATTGTTGTATGTACGAGTGCGTCGAGCAACAGATATGTCCATTTTAACCACC
CATATTCTTTTAATCAGCTTGATTGCTCCGAGTGTTTTCTTCCTTATCTCGCATCTGTAG
AGTACAAGTTGATCTGTAGGTCCCTACCAAAGTACCAATCATAGGCTACGTCCGACACAT
TTTTTGTATCTTTGTATGTGTAAAACATGTCAATGTCATTGAAGTACGACTACATTATAC
T