Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0108400-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:497751:499662:1 gene:Os03g0108400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Charged multivesicular body protein 3. (Os03t0108400-01)
Sequence

ATGGAGGCGGTGAAGAGCCTCCTCAAGCCCAAGCCGACGCCGCAGCAGCAGCTTCGCGAG
TGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCAGATCCGAGATGTGCAG
AGGGAGGAGAAGAAGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGA
TCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTAC
GAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCC
AGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACTTGTCAATAACCTTATG
AAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGGCTGGT
GTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAG
GAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTGCAATTGCTGGGGAGACTGCCTCT
GAGCTTCCAGACGCTGTCAGGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAA
CCTGCAGAGAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
CAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAA

Peptide Sequence

PEP ID

Os03t0108400-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:497751:499662:1 gene:Os03g0108400 transcript:Os03t0108400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Charged multivesicular body protein 3. (Os03t0108400-01)
Sequence

MEAVKSLLKPKPTPQQQLREWQRRLRNEGRNIDRQIRDVQREEKKVEKSIREAAKRNDIG
SAKALAKEVVRSRKAVNRLYENKAQLNSISMHLGEIVATARTVGHLSKSTEVMKLVNNLM
KAPEVAATMQEFSKEMTKAGVMEEMVNDAVDSALDNEDIEEEIEEEVDKVLSAIAGETAS
ELPDAVRKEKEKMKQPSTSEPAERTAIAEAVDDDDDDELEQIRERLAKVRS

Transcript Sequence

Transcript ID

Os03t0108400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:497751:499662:1 gene:Os03g0108400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Charged multivesicular body protein 3. (Os03t0108400-01)
Sequence

GCGTGCGTCTTCCCCACGCAGTCGTCTGCTGCTTCCGAATTCCGATCGGAGAGCAGCTGG
ACTCCGGTGAGGGATCATGGAGGCGGTGAAGAGCCTCCTCAAGCCCAAGCCGACGCCGCA
GCAGCAGCTTCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCA
GATCCGAGATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGTCCATCAGGGAGGCCGCCAA
GCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGC
GGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGA
GATCGTAGCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACT
TGTCAATAACCTTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGA
GATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGA
CAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTGCAATTGC
TGGGGAGACTGCCTCTGAGCTTCCAGACGCTGTCAGGAAGGAAAAGGAGAAGATGAAGCA
ACCTTCAACAAGTGAACCTGCAGAGAGAACTGCTATTGCGGAAGCCGTCGATGACGATGA
CGATGACGAGCTTGAACAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAA
TGATGAAAAGCAATCACTGGTTTGTTTTACTGTATTATACTCCACTTCAGAATGTATGTG
TGTCATATCAGAAATAGAAACCCCTTCTTGTTATTAACAAACTGATATACCTGCAACCTG
CATTCACTGATACAAAATTGTTCAATCTCAGTTGCAAGGGTAATTGTGTGCCCTGAAATT
TGTCTATTCGTTGTGCGTACATACGGGTATGTTGTGACATCTGTTATAATATCGCATATC
TTCCAGCTCATATATCCGGCTGAGAGCCTGAGACTTGGCAGTAACT