Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0107300-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:430697:432874:-1 gene:Os03g0107300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LOW SILICON RICE 2 description:Anion transporter, Silicon efflux transporter, Arsenic species (As) uptake (Os03t0107300-01)
Sequence	ATGAGTGAGCTTGCGTCGGCGCCCAAGGTGGCGCTTGGATCGATCGCGTTCGCGGTGTTC TGGATGATGGCGGTGTTCCCGTCGGTGCCGTTCCTGCCGATCGGGCGGACGGCGGGGTCG CTGCTGAGCGCGGTGCTGATGGTGATATTCCACGTGATCAGCCCCGACGACGCGTACGCC TCCATCGACCTCCCAATCCTGGGCCTCCTCTTCGCCACCATGGTGGTGGGCAGCTACCTC CGGAACGCCGGGATGTTCAAGCACCTGGGGCGTCTGCTGGCGTGGAAGAGCCAGGGCGGG CGCGACCTCATGTGCCGCGTCTGCGTCGTCACCGCCCTCGCCAGCGCCCTCTTCACCAAC GACACCTGCTGCGTCGTCCTCACCGAGTTCGTCCTCGAGCTCGCCGCCGAGCGCAACCTC CCCGCCAAGCCCTTCCTCCTCGCCCTCGCCTCCAGCGCCAACATCGGCTCCGCCGCCACC CCCATCGGCAACCCCCAGAACCTGGTCATCGCCTTCAATAGCAAGATCACCTTCCCCAAG TTCCTCATGGGAATCCTCCCGGCCATGCTCGTCGGGATGGCCGTCAACATGGTCATGCTG CTCTGCATGTACTGGAGGGAGCTGGGCGGAGGGGCCGAGCTCAGCGTCGACGGCAAGCAG ATGGAGGCGGTGGAGGAAGGCAGGTCGCCGGCGTCGGCCAAGAGCACGCCGCAGCTGAAC GGCAACGGCAACACGATGATGTCGCTGGAGATGTCGGAGAACATAACGACCAAGCACCCA TGGTTCATGCAGTGCACGGAGGCGCGGCGGAAGCTGTTCCTCAAGAGCTTCGCGTACGTG GTGACGGTGGGGATGGTGGTGGCCTACATGGTGGGGCTCAACATGTCGTGGACGGCCATC ACCACGGCGCTGGCGCTGGTGGTGGTCGACTTCCGCGACGCCGAGCCGTGCCTGGACACC GTGTCCTACTCGCTGCTCGTCTTCTTCTCCGGGATGTTCATCACCGTCAGCGGCTTCAAC AAGACGGGCCTCCCGGGAGCCATCTGGGACTTCATGGCCCCCTACTCCAAGGTCAACAGC GTCGGCGGCATCTCCGTCCTCTCCGTCATCATCCTCCTCCTCTCCAACCTCGCATCAAAC GTACCAACGGTGCTTCTTATGGGTGATGAGGTGGCGAAGGCGGCGGCGCTGATATCGCCG GCGGCGGTGACGACGTCGTGGCTGCTGCTGGCGTGGGTGAGCACGGTGGCGGGGAACCTG TCGCTGCTGGGGTCGGCGGCGAACCTGATAGTGTGCGAGCAGGCGAGGAGGGCGCCCAGG AACGCCTACGACCTCACCTTCTGGCAGCACATCGTCTTCGGCGTCCCATCCACCCTCATC GTCACCGCCGTCGGCATACCCCTCATCGGCAAGATCTGA

Peptide Sequence

PEP ID	Os03t0107300-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:430697:432874:-1 gene:Os03g0107300 transcript:Os03t0107300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LOW SILICON RICE 2 description:Anion transporter, Silicon efflux transporter, Arsenic species (As) uptake (Os03t0107300-01)
Sequence	MSELASAPKVALGSIAFAVFWMMAVFPSVPFLPIGRTAGSLLSAVLMVIFHVISPDDAYA SIDLPILGLLFATMVVGSYLRNAGMFKHLGRLLAWKSQGGRDLMCRVCVVTALASALFTN DTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSAATPIGNPQNLVIAFNSKITFPK FLMGILPAMLVGMAVNMVMLLCMYWRELGGGAELSVDGKQMEAVEEGRSPASAKSTPQLN GNGNTMMSLEMSENITTKHPWFMQCTEARRKLFLKSFAYVVTVGMVVAYMVGLNMSWTAI TTALALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWDFMAPYSKVNS VGGISVLSVIILLLSNLASNVPTVLLMGDEVAKAAALISPAAVTTSWLLLAWVSTVAGNL SLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAVGIPLIGKI

Transcript Sequence

Transcript ID	Os03t0107300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:430697:432874:-1 gene:Os03g0107300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LOW SILICON RICE 2 description:Anion transporter, Silicon efflux transporter, Arsenic species (As) uptake (Os03t0107300-01)
Sequence	TCAGCAGCGCATGCACTAGCAGCTTAGCTACTGCGCGCGTACCAGAGAGAGATCATCAGC TCAAGTAGCTAAGCTAGCTATAATCTGCTAGCTAGCTCGATCAGACACTTAATTACCTGC TAGGTGGTGGTCGATCGAAGAAGAAGAAGATGAGTGAGCTTGCGTCGGCGCCCAAGGTGG CGCTTGGATCGATCGCGTTCGCGGTGTTCTGGATGATGGCGGTGTTCCCGTCGGTGCCGT TCCTGCCGATCGGGCGGACGGCGGGGTCGCTGCTGAGCGCGGTGCTGATGGTGATATTCC ACGTGATCAGCCCCGACGACGCGTACGCCTCCATCGACCTCCCAATCCTGGGCCTCCTCT TCGCCACCATGGTGGTGGGCAGCTACCTCCGGAACGCCGGGATGTTCAAGCACCTGGGGC GTCTGCTGGCGTGGAAGAGCCAGGGCGGGCGCGACCTCATGTGCCGCGTCTGCGTCGTCA CCGCCCTCGCCAGCGCCCTCTTCACCAACGACACCTGCTGCGTCGTCCTCACCGAGTTCG TCCTCGAGCTCGCCGCCGAGCGCAACCTCCCCGCCAAGCCCTTCCTCCTCGCCCTCGCCT CCAGCGCCAACATCGGCTCCGCCGCCACCCCCATCGGCAACCCCCAGAACCTGGTCATCG CCTTCAATAGCAAGATCACCTTCCCCAAGTTCCTCATGGGAATCCTCCCGGCCATGCTCG TCGGGATGGCCGTCAACATGGTCATGCTGCTCTGCATGTACTGGAGGGAGCTGGGCGGAG GGGCCGAGCTCAGCGTCGACGGCAAGCAGATGGAGGCGGTGGAGGAAGGCAGGTCGCCGG CGTCGGCCAAGAGCACGCCGCAGCTGAACGGCAACGGCAACACGATGATGTCGCTGGAGA TGTCGGAGAACATAACGACCAAGCACCCATGGTTCATGCAGTGCACGGAGGCGCGGCGGA AGCTGTTCCTCAAGAGCTTCGCGTACGTGGTGACGGTGGGGATGGTGGTGGCCTACATGG TGGGGCTCAACATGTCGTGGACGGCCATCACCACGGCGCTGGCGCTGGTGGTGGTCGACT TCCGCGACGCCGAGCCGTGCCTGGACACCGTGTCCTACTCGCTGCTCGTCTTCTTCTCCG GGATGTTCATCACCGTCAGCGGCTTCAACAAGACGGGCCTCCCGGGAGCCATCTGGGACT TCATGGCCCCCTACTCCAAGGTCAACAGCGTCGGCGGCATCTCCGTCCTCTCCGTCATCA TCCTCCTCCTCTCCAACCTCGCATCAAACGTACCAACGGTGCTTCTTATGGGTGATGAGG TGGCGAAGGCGGCGGCGCTGATATCGCCGGCGGCGGTGACGACGTCGTGGCTGCTGCTGG CGTGGGTGAGCACGGTGGCGGGGAACCTGTCGCTGCTGGGGTCGGCGGCGAACCTGATAG TGTGCGAGCAGGCGAGGAGGGCGCCCAGGAACGCCTACGACCTCACCTTCTGGCAGCACA TCGTCTTCGGCGTCCCATCCACCCTCATCGTCACCGCCGTCGGCATACCCCTCATCGGCA AGATCTGATCTCATCTCATCGACCCATCCAAATTAATTAATTATGAGATCGACAAACATC CAAGCTTGCTAGGCTCGTCGTCGTCGTCGTCGACCACCGTACCATATATATGCATGCATG CCACGCACGTATATATATGCTCCTCAACCTCAAGTCAATTAATTAAGAGAATGGATGAAT GAATCAATGTTGTGTATGATTTCCTTTTTGTTTTTGTTTTACCCACCGTATATGTGCTGT GTGGTGTATGGCCGGCGAGCTTGAAATTGAATTGGCCTTGCTTGCATGCATGCATGGTGA TCAGATCAGCTCAGCTAGCTAGCTAAATCTTGCTTAATTTTATCAAGTGTCAATCATGAT GAGAAGAGAGGGAACTAGATGGAGCTAGCTAGCTAGCAACACATGCAGTGTGTGCTAAGC AGTGCACTCTGCATGCTTAAATTTGCTTGCTTAATTCAACATCGTATTACATGTATGTTG ATATGTGCATGTTCCTCAAAATACATGGAAAAAAAATGTTTCT