Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0106900-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:401132:402293:-1 gene:Os03g0106900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-EXPANSIN 1B description:Beta-expansin precursor (Beta-expansin 1). (Os03t0106900-00)
Sequence

ATGGCATCCTCCTCCCTTCTACTCGCCTGTGTTGTGGTGGCGGCTATGGTGTCCGCCGTC
TCCTGCGGGCCACCCAAGGTGCCACCGGGCCCCAACATCACGACAAGCTACGGCGACAAG
TGGCTGGAAGCCAAGGCCACCTGGTATGGTGCGCCCAAGGGTGCTGGCCCCAAGGACAAC
GGCGGCGCCTGCGGGTACAAGGATGTCGACAAGGCTCCCTTCCTCGGCATGAACTCCTGC
GGCAACGACCCCATCTTCAAGGACGGCAAGGGCTGCGGCTCATGCTTCGAGATCAAGTGC
TCCAAGCCGGAGGCCTGCTCCGACAAGCCCGCCCTTATCCACGTCACCGACATGAACGAC
GAGCCCATCGCTGCCTACCACTTTGACCTCTCCGGCCTTGCCTTCGGCGCCATGGCTAAG
GATGGCAAGGACGAAGAGCTCCGTAAGGCCGGCATCATCGACACGCAGTTCCGCCGCGTC
AAGTGCAAGTATCCTGCCGACACCAAGATCACCTTCCACATCGAGAAGGCCTCCAACCCC
AACTACCTTGCGCTGCTAGTCAAGTACGTCGCTGGTGATGGTGACGTCGTGGAGGTGGAA
ATCAAGGAGAAGGGCTCCGAGGAGTGGAAGGCGCTCAAGGAGTCATGGGGTGCCATTTGG
AGGATAGACACCCCCAAGCCGCTCAAGGGCCCCTTCTCCGTCCGCGTCACCACCGAGGGT
GGCGAGAAGATCATCGCCGAGGACGCCATCCCTGATGGCTGGAAGGCCGACAGCGTGTAC
AAGTCCAACGTCCAGGCCAAGTGA

Peptide Sequence

PEP ID

Os03t0106900-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:401132:402293:-1 gene:Os03g0106900 transcript:Os03t0106900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-EXPANSIN 1B description:Beta-expansin precursor (Beta-expansin 1). (Os03t0106900-00)
Sequence

MASSSLLLACVVVAAMVSAVSCGPPKVPPGPNITTSYGDKWLEAKATWYGAPKGAGPKDN
GGACGYKDVDKAPFLGMNSCGNDPIFKDGKGCGSCFEIKCSKPEACSDKPALIHVTDMND
EPIAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNP
NYLALLVKYVAGDGDVVEVEIKEKGSEEWKALKESWGAIWRIDTPKPLKGPFSVRVTTEG
GEKIIAEDAIPDGWKADSVYKSNVQAK

Transcript Sequence

Transcript ID

Os03t0106900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:401132:402293:-1 gene:Os03g0106900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-EXPANSIN 1B description:Beta-expansin precursor (Beta-expansin 1). (Os03t0106900-00)
Sequence

ATCATCCACCAGCAATAACATTATATTGCAGCAATGGCATCCTCCTCCCTTCTACTCGCC
TGTGTTGTGGTGGCGGCTATGGTGTCCGCCGTCTCCTGCGGGCCACCCAAGGTGCCACCG
GGCCCCAACATCACGACAAGCTACGGCGACAAGTGGCTGGAAGCCAAGGCCACCTGGTAT
GGTGCGCCCAAGGGTGCTGGCCCCAAGGACAACGGCGGCGCCTGCGGGTACAAGGATGTC
GACAAGGCTCCCTTCCTCGGCATGAACTCCTGCGGCAACGACCCCATCTTCAAGGACGGC
AAGGGCTGCGGCTCATGCTTCGAGATCAAGTGCTCCAAGCCGGAGGCCTGCTCCGACAAG
CCCGCCCTTATCCACGTCACCGACATGAACGACGAGCCCATCGCTGCCTACCACTTTGAC
CTCTCCGGCCTTGCCTTCGGCGCCATGGCTAAGGATGGCAAGGACGAAGAGCTCCGTAAG
GCCGGCATCATCGACACGCAGTTCCGCCGCGTCAAGTGCAAGTATCCTGCCGACACCAAG
ATCACCTTCCACATCGAGAAGGCCTCCAACCCCAACTACCTTGCGCTGCTAGTCAAGTAC
GTCGCTGGTGATGGTGACGTCGTGGAGGTGGAAATCAAGGAGAAGGGCTCCGAGGAGTGG
AAGGCGCTCAAGGAGTCATGGGGTGCCATTTGGAGGATAGACACCCCCAAGCCGCTCAAG
GGCCCCTTCTCCGTCCGCGTCACCACCGAGGGTGGCGAGAAGATCATCGCCGAGGACGCC
ATCCCTGATGGCTGGAAGGCCGACAGCGTGTACAAGTCCAACGTCCAGGCCAAGTGAGCA
TTTTAAGCAAGGAAGAAACCAGCGTACGTACGATCCGGCGCGGCTGCCTATATATATATA
TATATATATATATTATATATATATTATATACTATATATGTGTTGCTGCATGCTTGCATGC
ATGCACATATATATCCAGAGAAATATTTTTTAAACGAAATAATCTATAAATTTCTGAGCT
AGGATTGTGGAGCATATACACGCCAGCACTATAATGGCGTCTGCTCTCCCATCGAACTGG
CCCTGTGACAATGGGGTCATTTGTTTTTGCCCACAATATTTTCTGCTAAATTCATTCTCT
GATTTTGCGTGAGATTATCATG