Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0106300-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:370325:374690:-1 gene:Os03g0106300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 description:Coiled-coil protein, Homologous chromosome pairing in meiosis (Os03t0106300-01)
Sequence

ATGAAGCTTAAGATGAACAAGGCCTGCGACATCGCCTCCATCTCCGTCCTCCCTCCCCGG
AGGACCGGAGGGAGCAGCGGCGCGTCGGCTTCCGGTTCCGTGGCGGTGGCGGTGGCGTCT
CAGCCGCGGTCGCAGCCGCTCTCGCAGTCGCAGCAGTCCTTCTCGCAGGGCGCCTCCGCC
TCGCTCTTGCACTCGCAGTCGCAGTTCTCGCAGGTCTCCCTCGACGACAACCTCCTCACC
CTCCTCCCTTCCCCCACCCGCGATCAGAGATTTGGCTTGCATGATGACTCATCCAAGAGG
ATGTCCTCTTTACCAGCCAGTTCAGCTTCTTGCGCGCGAGAAGAGTCTCAGCTGCAACTG
GCAAAATTACCAAGCAACCCAGTGCACCGCTGGAACCCCTCCATTGCAGATACTAGATCA
GGTCAGGTTACTAATGAGGATGTTGAGCGCAAATTTCAGCATCTGGCAAGCTCAGTACAT
AAGATGGGGATGGTGGTAGACTCAGTCCAAAGTGACGTAATGCAGTTAAACAGAGCCATG
AAGGAGGCATCATTAGATTCTGGTAGCATACGGCAAAAGATTGCTGTCCTTGAAAGCTCA
CTTCAGCAAATTCTTAAGGGACAAGACGATCTCAAAGCACTCTTTGGAAGCAGCACAAAA
CACAATCCTGATCAGACAAGTGTTCTGAATTCTCTAGGCAGCAAATTGAATGAGATATCC
TCGACCCTTGCAACCTTGCAGACACAAATGCAAGCAAGACAACTGCAGGGTGATCAGACA
ACTGTTCTGAATTCTAATGCCAGCAAATCGAATGAGATATCCTCGACTCTTGCAACCCTG
CAGACACAAATGCAAGCAGATATAAGACAACTGCGGTGTGACGTCTTCAGAGTTTTTACA
AAAGAGATGGAGGGGGTTGTTAGAGCTATCAGGTCTGTCAATAGTAGGCCTGCTGCAATG
CAAATGATGGCAGACCAGAGTTACCAAGTACCAGTTTCAAATGGATGGACCCAGATTAAC
CAGACACCAGTAGCAGCTGGAAGGTCTCCAATGAACCGAGCACCAGTAGCAGCTGGAAGG
TCCCGGATGAACCAATTACCTGAAACAAAAGTGCTTTCTGCACATTTGGTTTATCCTGCA
AAGGTGACAGATCTGAAGCCAAAGGTGGAGCAGGGAAAGGTAAAAGCAGCTCCACAAAAG
CCGTTTGCTTCGAGCTACTACAGGGTGGCACCTAAACAGGAAGAGGTAGCGATTAGAAAG
GTCAATATACAAGTGCCAGCAAAGAAGGCACCAGTCAGCATAATCATCGAGTCGGATGAT
GACAGTGAAGGACGTGCGTCCTGCGTGATTTTGAAGACAGAAACAGGTAGCAAGGAGTGG
AAAGTGACAAAGCAAGGCACCGAAGAGGGCCTGGAGATCCTGCGGAGGGCGAGGAAGAGG
AGGAGGAGAGAGATGCAGTCCATCGTGCTCGCATCCTAG

Peptide Sequence

PEP ID

Os03t0106300-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:370325:374690:-1 gene:Os03g0106300 transcript:Os03t0106300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 description:Coiled-coil protein, Homologous chromosome pairing in meiosis (Os03t0106300-01)
Sequence

MKLKMNKACDIASISVLPPRRTGGSSGASASGSVAVAVASQPRSQPLSQSQQSFSQGASA
SLLHSQSQFSQVSLDDNLLTLLPSPTRDQRFGLHDDSSKRMSSLPASSASCAREESQLQL
AKLPSNPVHRWNPSIADTRSGQVTNEDVERKFQHLASSVHKMGMVVDSVQSDVMQLNRAM
KEASLDSGSIRQKIAVLESSLQQILKGQDDLKALFGSSTKHNPDQTSVLNSLGSKLNEIS
STLATLQTQMQARQLQGDQTTVLNSNASKSNEISSTLATLQTQMQADIRQLRCDVFRVFT
KEMEGVVRAIRSVNSRPAAMQMMADQSYQVPVSNGWTQINQTPVAAGRSPMNRAPVAAGR
SRMNQLPETKVLSAHLVYPAKVTDLKPKVEQGKVKAAPQKPFASSYYRVAPKQEEVAIRK
VNIQVPAKKAPVSIIIESDDDSEGRASCVILKTETGSKEWKVTKQGTEEGLEILRRARKR
RRREMQSIVLAS

Transcript Sequence

Transcript ID

Os03t0106300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:370325:374690:-1 gene:Os03g0106300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 description:Coiled-coil protein, Homologous chromosome pairing in meiosis (Os03t0106300-01)
Sequence

GCAGGAAGAAATTCAAATTTGCGAATATTCTCTCTCTCTCCCCGGCGAAGGCGACGGCGA
AGGAGAAGGCTACGGCGATCGGCGGCGATCGGCGGCATGAAGCTTAAGATGAACAAGGCC
TGCGACATCGCCTCCATCTCCGTCCTCCCTCCCCGGAGGACCGGAGGGAGCAGCGGCGCG
TCGGCTTCCGGTTCCGTGGCGGTGGCGGTGGCGTCTCAGCCGCGGTCGCAGCCGCTCTCG
CAGTCGCAGCAGTCCTTCTCGCAGGGCGCCTCCGCCTCGCTCTTGCACTCGCAGTCGCAG
TTCTCGCAGGTCTCCCTCGACGACAACCTCCTCACCCTCCTCCCTTCCCCCACCCGCGAT
CAGAGATTTGGCTTGCATGATGACTCATCCAAGAGGATGTCCTCTTTACCAGCCAGTTCA
GCTTCTTGCGCGCGAGAAGAGTCTCAGCTGCAACTGGCAAAATTACCAAGCAACCCAGTG
CACCGCTGGAACCCCTCCATTGCAGATACTAGATCAGGTCAGGTTACTAATGAGGATGTT
GAGCGCAAATTTCAGCATCTGGCAAGCTCAGTACATAAGATGGGGATGGTGGTAGACTCA
GTCCAAAGTGACGTAATGCAGTTAAACAGAGCCATGAAGGAGGCATCATTAGATTCTGGT
AGCATACGGCAAAAGATTGCTGTCCTTGAAAGCTCACTTCAGCAAATTCTTAAGGGACAA
GACGATCTCAAAGCACTCTTTGGAAGCAGCACAAAACACAATCCTGATCAGACAAGTGTT
CTGAATTCTCTAGGCAGCAAATTGAATGAGATATCCTCGACCCTTGCAACCTTGCAGACA
CAAATGCAAGCAAGACAACTGCAGGGTGATCAGACAACTGTTCTGAATTCTAATGCCAGC
AAATCGAATGAGATATCCTCGACTCTTGCAACCCTGCAGACACAAATGCAAGCAGATATA
AGACAACTGCGGTGTGACGTCTTCAGAGTTTTTACAAAAGAGATGGAGGGGGTTGTTAGA
GCTATCAGGTCTGTCAATAGTAGGCCTGCTGCAATGCAAATGATGGCAGACCAGAGTTAC
CAAGTACCAGTTTCAAATGGATGGACCCAGATTAACCAGACACCAGTAGCAGCTGGAAGG
TCTCCAATGAACCGAGCACCAGTAGCAGCTGGAAGGTCCCGGATGAACCAATTACCTGAA
ACAAAAGTGCTTTCTGCACATTTGGTTTATCCTGCAAAGGTGACAGATCTGAAGCCAAAG
GTGGAGCAGGGAAAGGTAAAAGCAGCTCCACAAAAGCCGTTTGCTTCGAGCTACTACAGG
GTGGCACCTAAACAGGAAGAGGTAGCGATTAGAAAGGTCAATATACAAGTGCCAGCAAAG
AAGGCACCAGTCAGCATAATCATCGAGTCGGATGATGACAGTGAAGGACGTGCGTCCTGC
GTGATTTTGAAGACAGAAACAGGTAGCAAGGAGTGGAAAGTGACAAAGCAAGGCACCGAA
GAGGGCCTGGAGATCCTGCGGAGGGCGAGGAAGAGGAGGAGGAGAGAGATGCAGTCCATC
GTGCTCGCATCCTAGCTAATTAATGGTAACGCCGCATGCATCGTCATCATCATCTCAAGA
TTGACTGATTGTTTTAACATAAAGCCAAACAAAGGAAAGAGATAAAGATTACGACAAGAC
GAAATTAAAAGGTAAATCAACCACT