Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0103000-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:202527:205750:1 gene:Os03g0103000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nitrate transporter 1.1C description:Similar to Nitrate transporter. (Os03t0103000-01)
Sequence

ATGGCGGTGGCGGCGAGAGTAGTGGAGGAGGAGGATCCAGATGTCGTAGAGATGATGAAG
AGGAGGGATGATGAGGAGGAGGTGGTGGGTGAGGCGTGGGACTACAAGGGAAGGGGTGCC
ATCCGGGGGTCGACGGGCGGGTGGCGGAGCGCGGCGATGATCCTGTGCGTGGAGCTCAAC
GAGCGGCTCACCACCCTCGGCGTCGCCGTCAACCTGGTGACCTACCTCACCGGGACTATG
CACCTCGGCAGCGCCGCCTCCGCCAACGCCGTCACCAACTTCCTCGGCACCTCCTTCATG
CTCTGCCTCCTCGGCGGCTTCCTCGCCGACACCTACCTCGGCCGCTACCTCACCATCGCC
ATCTTCACCGCCGTCCAAGCGGCCGGCATGGCCGTCCTGACCATCTCCACGGCGGCGCCA
GGGCTCCGTCCGCCACCGTGCAGTAGCGGCGGGAGCGGCTGTGCGGCAGCCAACGGGACG
CAGCTGGGAGTGCTGTACCTGGGCCTCTACATGACTGCGCTGGGCACCGGCGGCCTCAAG
TCCAGCGTGTCCGGGTTCGGGTCGGACCAGTTCGACGAGTCCGACGGCGGCGAGAGGGGC
AGCATGGCGCGCTTCTTCAGCTGGTTCTTCTTCTTCATCAGCATGGGGTCGCTGCTGGCG
GTGACGGTGCTGGTGTACGTGCAGGACAAGGTAGGGCGGCGGTGGGGATACGGCATCTGC
GTGGTGGCCATACTCACCGGCCTCCTCTTCTTCCTCGCCGGCACCACCACCTACCGCTTC
AAGAAGCTGCTGGGGAGCCCCCTCACTCAGATCGCCGCCGTCACTGCCGCCGCCTGGACT
AACCGCAACCTGCCACTGCCGTCCGACCCATCCATGCTCAACCACGACGACTCGGCCCAC
ACCACCGCAAAGCCCAACCAAAAGCTGCCCCACTCCAAACAATTCAGGTTCCTGGACCAT
GCGGCGATCGTGGAGACGACGACGGCAGAGGCGAAGAAGAGGAAGAGGTGGGCGGCGTGC
TGCACGGTGACGGAGGTGGAGGAGGTGAAGCAGCTGGTGCGGATGCTGCCGACGTGGGCC
ACCACCATCCTCTTCTGGACGGTGTACGCCCAGATGACCACCTTCTCCGTCTCCCAAGCC
GCCGTCATGGACCGCCGCCTCTCCACCAGCTTCGTCATCCCCGCCGGCTCCCTCACCGTC
TTCTTCGTCGCCGCCATCCTCCTCACCGTCCCTCTATACTACCGCCTCCTCGCCCCGCTC
GTCCGCCGCCTCACCGCCAACCCGCGGTACGACCTCTCCCCGCTCCACCGCATCTTCGTC
GGCCTCCTCCTCGCCGCCCTCGCCATGGTCGCCGCCGCGCTCACCGAGCGCGCGCGCCGC
GACGCCGCCGTGACGCTGTCGGTGTTCTACCTCCTGCCGCAGTTCCTCCTGGTGGGCGCC
GGCGAGGCCTTCACCTACATCGGGCAGCTGGACTTCTTCCTGCGCGAGTGCCCCAAGGGG
ATGAAGACCATGAGCACGGGCCTGTTCCTGAGCACGCTCTCGCTGGGCTTCTTCTTCAGC
ACGGCGCTGGTCACCGTGGTGCACAAGGTCACGGCGGAGTCCCGGCGGCCATGGCTCGCC
GACAACCTGGACGAGGGAAGGCTGGACAACTTCTACTGGCTGCTGGGTGGGATCAGCGTG
GTGAACCTAGCGGTGTTCGTGGCAGCAGCAGCCAGGGGGTACGTCTACAGGGAGAAGCGC
CTCGCCGACGCCGGAATAATACATATATAA

Peptide Sequence

PEP ID

Os03t0103000-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:202527:205750:1 gene:Os03g0103000 transcript:Os03t0103000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nitrate transporter 1.1C description:Similar to Nitrate transporter. (Os03t0103000-01)
Sequence

MAVAARVVEEEDPDVVEMMKRRDDEEEVVGEAWDYKGRGAIRGSTGGWRSAAMILCVELN
ERLTTLGVAVNLVTYLTGTMHLGSAASANAVTNFLGTSFMLCLLGGFLADTYLGRYLTIA
IFTAVQAAGMAVLTISTAAPGLRPPPCSSGGSGCAAANGTQLGVLYLGLYMTALGTGGLK
SSVSGFGSDQFDESDGGERGSMARFFSWFFFFISMGSLLAVTVLVYVQDKVGRRWGYGIC
VVAILTGLLFFLAGTTTYRFKKLLGSPLTQIAAVTAAAWTNRNLPLPSDPSMLNHDDSAH
TTAKPNQKLPHSKQFRFLDHAAIVETTTAEAKKRKRWAACCTVTEVEEVKQLVRMLPTWA
TTILFWTVYAQMTTFSVSQAAVMDRRLSTSFVIPAGSLTVFFVAAILLTVPLYYRLLAPL
VRRLTANPRYDLSPLHRIFVGLLLAALAMVAAALTERARRDAAVTLSVFYLLPQFLLVGA
GEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFFSTALVTVVHKVTAESRRPWLA
DNLDEGRLDNFYWLLGGISVVNLAVFVAAAARGYVYREKRLADAGIIHI

Transcript Sequence

Transcript ID

Os03t0103000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:202527:205750:1 gene:Os03g0103000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nitrate transporter 1.1C description:Similar to Nitrate transporter. (Os03t0103000-01)
Sequence

GAGTGTCCGGCACGAGCAGTGGATCGAGAGAGCAGAGCGAACGAGATATACAAGGGAAGA
AGAAGAAGAAGAGATCGATCGATCGATCGATGGCGGTGGCGGCGAGAGTAGTGGAGGAGG
AGGATCCAGATGTCGTAGAGATGATGAAGAGGAGGGATGATGAGGAGGAGGTGGTGGGTG
AGGCGTGGGACTACAAGGGAAGGGGTGCCATCCGGGGGTCGACGGGCGGGTGGCGGAGCG
CGGCGATGATCCTGTGCGTGGAGCTCAACGAGCGGCTCACCACCCTCGGCGTCGCCGTCA
ACCTGGTGACCTACCTCACCGGGACTATGCACCTCGGCAGCGCCGCCTCCGCCAACGCCG
TCACCAACTTCCTCGGCACCTCCTTCATGCTCTGCCTCCTCGGCGGCTTCCTCGCCGACA
CCTACCTCGGCCGCTACCTCACCATCGCCATCTTCACCGCCGTCCAAGCGGCCGGCATGG
CCGTCCTGACCATCTCCACGGCGGCGCCAGGGCTCCGTCCGCCACCGTGCAGTAGCGGCG
GGAGCGGCTGTGCGGCAGCCAACGGGACGCAGCTGGGAGTGCTGTACCTGGGCCTCTACA
TGACTGCGCTGGGCACCGGCGGCCTCAAGTCCAGCGTGTCCGGGTTCGGGTCGGACCAGT
TCGACGAGTCCGACGGCGGCGAGAGGGGCAGCATGGCGCGCTTCTTCAGCTGGTTCTTCT
TCTTCATCAGCATGGGGTCGCTGCTGGCGGTGACGGTGCTGGTGTACGTGCAGGACAAGG
TAGGGCGGCGGTGGGGATACGGCATCTGCGTGGTGGCCATACTCACCGGCCTCCTCTTCT
TCCTCGCCGGCACCACCACCTACCGCTTCAAGAAGCTGCTGGGGAGCCCCCTCACTCAGA
TCGCCGCCGTCACTGCCGCCGCCTGGACTAACCGCAACCTGCCACTGCCGTCCGACCCAT
CCATGCTCAACCACGACGACTCGGCCCACACCACCGCAAAGCCCAACCAAAAGCTGCCCC
ACTCCAAACAATTCAGGTTCCTGGACCATGCGGCGATCGTGGAGACGACGACGGCAGAGG
CGAAGAAGAGGAAGAGGTGGGCGGCGTGCTGCACGGTGACGGAGGTGGAGGAGGTGAAGC
AGCTGGTGCGGATGCTGCCGACGTGGGCCACCACCATCCTCTTCTGGACGGTGTACGCCC
AGATGACCACCTTCTCCGTCTCCCAAGCCGCCGTCATGGACCGCCGCCTCTCCACCAGCT
TCGTCATCCCCGCCGGCTCCCTCACCGTCTTCTTCGTCGCCGCCATCCTCCTCACCGTCC
CTCTATACTACCGCCTCCTCGCCCCGCTCGTCCGCCGCCTCACCGCCAACCCGCGGTACG
ACCTCTCCCCGCTCCACCGCATCTTCGTCGGCCTCCTCCTCGCCGCCCTCGCCATGGTCG
CCGCCGCGCTCACCGAGCGCGCGCGCCGCGACGCCGCCGTGACGCTGTCGGTGTTCTACC
TCCTGCCGCAGTTCCTCCTGGTGGGCGCCGGCGAGGCCTTCACCTACATCGGGCAGCTGG
ACTTCTTCCTGCGCGAGTGCCCCAAGGGGATGAAGACCATGAGCACGGGCCTGTTCCTGA
GCACGCTCTCGCTGGGCTTCTTCTTCAGCACGGCGCTGGTCACCGTGGTGCACAAGGTCA
CGGCGGAGTCCCGGCGGCCATGGCTCGCCGACAACCTGGACGAGGGAAGGCTGGACAACT
TCTACTGGCTGCTGGGTGGGATCAGCGTGGTGAACCTAGCGGTGTTCGTGGCAGCAGCAG
CCAGGGGGTACGTCTACAGGGAGAAGCGCCTCGCCGACGCCGGAATAATACATATATAAT
CAGCGCTAGCTCTGTCGACGACCTCCTCATCCCCGCATGATATCTACTCTACTACCATTG
ATTCGTGATAAATATAATGGCAAATAGTATAATTAAGCTTACAAAAAGTGAGGAAACCAA
TATATAATCATCGATGTAACCGGCAGCTAGCCTAGCTTATAAGTACTATATACGCACGCA
TCCAGGTAATTAGCCGCTTTGTACTATAATTAACTTGTCAAGCTGTGCGTGTGTTTCATC
TTGAACAACTTTAGAGCCATGTTTCAACAGATGC