Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0102400-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:169880:175129:-1 gene:Os03g0102400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 2-phosphoglycerate kinase-related. (Os03t0102400-01)
Sequence

ATGGTGCGAGCAGCGTCAGGGGCAGATCCACCACCATTCCTCCAAACACGCATGGTGGAC
ATGCCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCTCTCTCAATCTCAATCTCAATCTCAC
TCCCACTCTCAGACTCACAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGCAGGAG
GAGGAGAAGCCCTCCCCCTCCCGTAACGCCTCCTCCAAGTACGACTTCGTCAAGGTCAAG
GTGTGGCTTGGCGAGAATGCCGATCACTACTACGTCCTCTCCAGGTTCCTCCTCTGCAGG
ATGCTCACCGTCACCAAGATTCCTAATCATGTTGCCATTAAGATTGCCCTTGAACTCAAG
AAATTGCTTGTCGACAACAGCCTCCTTGATGTTTCTCAGAGTGACTTAGAGGCTAACCTA
TTTAAGCTCATGGAGAAGCGGGGATACGGCGAGGATTATATTAATCGGTATAAAATGATG
ACCAGATTCCATCATCAAAGAGTACCACTAGTAGTTTTAGTGTGTGGAACTGCTTGTACG
GGAAAATCAACAATTGCTACGCAACTAGCTGGAAGGCTGAATTTACCAAATGTTTTGCAG
ACAGACATGGTGTATGAGTTGCTACGGACATCAACAGATGCCCCTCTTACTTCGGTGCCC
GTGTGGGCTCGGGATTTTGATTCTCCTGAAGAGCTTATCACAGAGTTCTGCAGAGAATGC
AGAGTTGTTCGCAAAGGTTTGGCTGGTGATTTGAAGAAGGCCATGAAAGATGGGAAGCCA
ATTATCATCGAGGGAATTCATTTGGATCCAAGTATTTATTTGATGGACGAGGAAAAGAGA
GATGATAATTCCAAAATGGAGAAGAAGGTAGCTGAATCTGAAAATTCACCAGCAACTGTA
AAGAGCAAGACAGAAAAGCAACAAGAAAACGAACTACATGAGAAGAGAATGGATGACAGT
CAGGAGTGCATGTCTGAGGAGGGTAGAATAAGTGAAGGGCTATCTTGTGCTAAAAGCCAC
GTAATTAGCTCTTCTGATCCTGCATGTTCTAAAGAGAAAAATCCCAGAGCTGAAGGTGAA
GGACATAAGGATTTGGACCTACAGAAAAACAACGCCACCAAGAAGGACAAACCTGCTGCT
AAACCAATAATAGTCCCAATTGTGTTGAGGATGTCTGATTTTGATCACAAGGCATTGTTA
GAGGAATGGATAGCCACCAGGGCTTCCAGGGATAATTGTCTTCCTCAGGATCATCGAAAG
CTTATAAACAACCTTAAGCTTATTCAGGACTATCTTTGTTCTTTTGAATCACAGGGATTG
ACCGTTGTTGACATTTCAGCGAACTCATTCCCTCAGACACTAGATTGGCTTCACAGCTAT
CTTCTTCAGTGCATCGAACGTGGCCTTTTGGCTGCATGTTCAGAAAGTCCCAAGCAAGGT
GGGAGCTAA

Peptide Sequence

PEP ID

Os03t0102400-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:169880:175129:-1 gene:Os03g0102400 transcript:Os03t0102400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 2-phosphoglycerate kinase-related. (Os03t0102400-01)
Sequence

MVRAASGADPPPFLQTRMVDMPSSSSSSSSSLSQSQSQSHSHSQTHKEKEKEKEKEEEQE
EEKPSPSRNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPNHVAIKIALELK
KLLVDNSLLDVSQSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVPLVVLVCGTACT
GKSTIATQLAGRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFDSPEELITEFCREC
RVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEEKRDDNSKMEKKVAESENSPATV
KSKTEKQQENELHEKRMDDSQECMSEEGRISEGLSCAKSHVISSSDPACSKEKNPRAEGE
GHKDLDLQKNNATKKDKPAAKPIIVPIVLRMSDFDHKALLEEWIATRASRDNCLPQDHRK
LINNLKLIQDYLCSFESQGLTVVDISANSFPQTLDWLHSYLLQCIERGLLAACSESPKQG
GS

Transcript Sequence

Transcript ID

Os03t0102400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:169880:175129:-1 gene:Os03g0102400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 2-phosphoglycerate kinase-related. (Os03t0102400-01)
Sequence

CTCCTCTTCTTCTTCTTTCCTCTCCTGTGATTCTGTGAAGGAATGGTGGTGGTGGAATCA
ATCAATCAATCGATCGATCAATCAATCGTGCAAGGGAAGAAGGGAATCAAAATCGTTTTC
TTTTTGTTTGTTTTTTGAAGGGAGGGGAGGGGGGCGATCGACCAGACCACCATGGTGCGA
GCAGCGTCAGGGGCAGATCCACCACCATTCCTCCAAACACGCATGGTGGACATGCCCTCC
TCCTCCTCCTCCTCCTCCTCTTCCCTCTCTCAATCTCAATCTCAATCTCACTCCCACTCT
CAGACTCACAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGCAGGAGGAGGAGAAG
CCCTCCCCCTCCCGTAACGCCTCCTCCAAGTACGACTTCGTCAAGGTCAAGGTGTGGCTT
GGCGAGAATGCCGATCACTACTACGTCCTCTCCAGGTTCCTCCTCTGCAGGATGCTCACC
GTCACCAAGATTCCTAATCATGTTGCCATTAAGATTGCCCTTGAACTCAAGAAATTGCTT
GTCGACAACAGCCTCCTTGATGTTTCTCAGAGTGACTTAGAGGCTAACCTATTTAAGCTC
ATGGAGAAGCGGGGATACGGCGAGGATTATATTAATCGGTATAAAATGATGACCAGATTC
CATCATCAAAGAGTACCACTAGTAGTTTTAGTGTGTGGAACTGCTTGTACGGGAAAATCA
ACAATTGCTACGCAACTAGCTGGAAGGCTGAATTTACCAAATGTTTTGCAGACAGACATG
GTGTATGAGTTGCTACGGACATCAACAGATGCCCCTCTTACTTCGGTGCCCGTGTGGGCT
CGGGATTTTGATTCTCCTGAAGAGCTTATCACAGAGTTCTGCAGAGAATGCAGAGTTGTT
CGCAAAGGTTTGGCTGGTGATTTGAAGAAGGCCATGAAAGATGGGAAGCCAATTATCATC
GAGGGAATTCATTTGGATCCAAGTATTTATTTGATGGACGAGGAAAAGAGAGATGATAAT
TCCAAAATGGAGAAGAAGGTAGCTGAATCTGAAAATTCACCAGCAACTGTAAAGAGCAAG
ACAGAAAAGCAACAAGAAAACGAACTACATGAGAAGAGAATGGATGACAGTCAGGAGTGC
ATGTCTGAGGAGGGTAGAATAAGTGAAGGGCTATCTTGTGCTAAAAGCCACGTAATTAGC
TCTTCTGATCCTGCATGTTCTAAAGAGAAAAATCCCAGAGCTGAAGGTGAAGGACATAAG
GATTTGGACCTACAGAAAAACAACGCCACCAAGAAGGACAAACCTGCTGCTAAACCAATA
ATAGTCCCAATTGTGTTGAGGATGTCTGATTTTGATCACAAGGCATTGTTAGAGGAATGG
ATAGCCACCAGGGCTTCCAGGGATAATTGTCTTCCTCAGGATCATCGAAAGCTTATAAAC
AACCTTAAGCTTATTCAGGACTATCTTTGTTCTTTTGAATCACAGGGATTGACCGTTGTT
GACATTTCAGCGAACTCATTCCCTCAGACACTAGATTGGCTTCACAGCTATCTTCTTCAG
TGCATCGAACGTGGCCTTTTGGCTGCATGTTCAGAAAGTCCCAAGCAAGGTGGGAGCTAA
CGGATACGGACGAAGCCCGCATTAGTGTTGCTTAAGATATATTGGTTGGTAATCAGGAAC
GTTGGCAGTGGTAGAGAACTCCATAGTTGGATAAAAGCTTTTTAGAGGTGGATCGGTAAA
ATGAAAAGAAACTCAAGGCCGGTGAAATAATGCGATCACTCACATAGACATAAGTTTTGT
TTTTCCCCGAGCTCCCAGAGATAATAGATACTAGTACTGTAGTACATCTCGCAGAATTGA
GACGAGTATGCTCAATTAATTGAGCGAAAAGACGAGTATAAAGAGGTCAATCTCGGGTCA
TCCAACATATCAACAAACTCGATCAGCACCTTGTCAATCTGTGGTCCACAGCGTATAAAA
GGTCGGCTCCACAGCTTGTAACGTGGATTCTGAAACATCATTTTATCATCATCATCATCA
TCC