Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0102100-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:144652:147750:1 gene:Os03g0102100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to formyltetrahydrofolate deformylase. (Os03t0102100-01);Formyltetrahydrofolate deformylase family protein. (Os03t0102100-02)
Sequence

ATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGC
ATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATC
GCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTC
TTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGC
ACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCT
GATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTT
GACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGC
AACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCC
TATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTT
CAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTC
AAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGA
GGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCAT
TTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCC
CACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTA
GCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACA
GTAGTGTTCTGA

Peptide Sequence

PEP ID

Os03t0102100-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:144652:147750:1 gene:Os03g0102100 transcript:Os03t0102100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to formyltetrahydrofolate deformylase. (Os03t0102100-01);Formyltetrahydrofolate deformylase family protein. (Os03t0102100-02)
Sequence

MLSVARRPLSAAVPVGNLLGIHLFQCPDTVGIVARLSECIASRGGNIHSVDVFVPDDKPV
FYSRSEFTYNPMLWPRDVLRTDFLNLSQHFSAQRSTVRVPDLDPKYKISVLASKQDHCLF
DLLYRWQEGRLPVDINCVISNHDRLKDNHVRRFLERHGIPYHYLPTSPGNKREQEILELV
QGTDFVVLARYMQILSEGFLKAYGKDIINIHHGLLPSFKGGNPSRQAFNAGVKLIGATSH
FVTPELDAGPIIEQMVERVSHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKT
VVF

Transcript Sequence

Transcript ID

Os03t0102100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:144652:147750:1 gene:Os03g0102100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to formyltetrahydrofolate deformylase. (Os03t0102100-01);Formyltetrahydrofolate deformylase family protein. (Os03t0102100-02)
Sequence

ATCCCGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGC
CCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCA
ATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGG
CAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAG
TGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAA
TCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAA
ATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAG
ATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACT
TAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACC
GACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTT
TGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAA
AGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAG
ACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGA
ACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCT
ACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAA
GTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATA
TCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTA
CAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTG
GCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGA
TAATGCAT