Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0100400-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:66406:71674:1 gene:Os03g0100400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:XPF (Rad1), XPF, Rad1 description:Similar to DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet hypersensitive 1) (AtRAD1) (DNA excision repair protein XP-F homolog). (Os03t0100400-01)
Sequence	ATGCTTCCCTTCGAGGAGCAGGTGGTGGCGGACCTCCTGGAGGACCCCAACGGCGGCCTG GTGGTGGTTTCGTGTGGCCTCCCGGTGGCCTCCCTGGCGTCCGCCGTCCTCCTCCAGCTC TTCCACCAATCCCCCGACGATGGCTGCTTCCTGATCCTCTCCGCCCCCGAGCCGGTCAAA GCTCAAATCCGGCGGCGCCTCCTCCTCAACTCCCAGAGCCAGCCTCCTCTCTTGCAGCTG CAGGTCCACGACGTGGCCCCCGACCTCCCCGCCCACCACCGCGTCGCCCTCTACGCCTCC CGCGCCGCGCTCTTCCTCTCCCCCCGCGCCCTCGTCGCCGACTTCCTCACCTCCCGCCTC CTCCCCTCCCGCGTCCGCGCCCTCCTCCTCCTCTCCGCCCACCGCTCCTCCGACACCTCC TCCGACGCCTTCGTGGCTCGCCTCCTCCGCCACCACCACCTCCTCCCTGTTTATGCCTTC TCCGATCGCCCCCATGCCATGGTCTCCGGCTTCGCCAAGGCGGAGCGCGCTATGAAGAGC CTCTACATTCGACGCCTCCACCTTTGGCCCCGCTTCCACCTTCTTGCTGCCGCTGACCTC GAGCGCTCCCCGCCCGAGGTCATCGACGTCCGCGTCCCCATGACTCAGCCTATGAGGGGC ATCCAGGCCGCTATCCTCGATGCCATGGACGCCTGCCTCAAGGAGCTCAGGCGGACCAAC AAGGTCGACGTCGAAGACCTCACCGTCGACAAGGGCCTCTTCAAGTCTTTTGATGAGATC GTCAGGAGGCAGCTCGACCCCATCTGGCACACGCTCGGCAAGAAGACCAAGCAGCTCGTC GCCGACCTCAGGACGCTACGCAAGCTGCTTGATTATCTTGTCAGGTACGATGCTGTGACA TACCTTAAGTACCTGGACACACTCAGAGTATCTGAAGGCGTCCGATCTGTTTGGATATTT GCTGACTCAAGCCACAAGATATTCGACCTTTCAAAAAGGCGTGTCTACCAGGTTGTGAGA GCAGACGGTACAAAGGTTGCAGCAGACAACAAGGGCACACCAACAAAGAAGAGGAAGGTG GCACGCGCTAGCAGCAGGAAAGGAAAAGAAACTGAAAATGAGGGTTCCAGTGATAACAAG GACAATACTCAGAAGGTTAATGCAGAGATGGGCATTGTAGTGGAGGAGATTTTAGAGGAA GCACCTAAATGGAAGGTTTTACGGGAACTATTGCAGGAGATAGCAGAAGAACAGGCAAAG GGAGATGGTGACAATGTAAACCCTGTTCATGAAGACGGAATTAACGAGAGTGGCATAGTT TTGGTAGCATGCAAAGATGAGCGCTCATGCGTGCAGCTGCAAGAATGCATATCAAAAGGC TCGCATCAGGTCATGCGGGCCGAGTGGGAGAAGTACTTGCTTGGCAAAGCTGAACTGCAT GGATTGCATAGGAAGAACAAGAAAACATCTCAGCAACTAAAAGGGTTTGGTGTTCTGGAT GGGGAAGTTCCTATGAGGTCTGGTGAGAGTGCAGGTCCTGTTAGCATTAGCAAGGTTGAG GCTAATGCCTTACTTGCGGCTGCCTCTGAAATAAGCACTGTAACTAAGGAAGCAAATCTT GCTGATGATTCAAATGTCAGCTGCAAGAAGAGATCATTCGGAAAAGGGAAAGGGAAAGGG AAATTTAAGAAAACCATGGCAAAGAGAGAAGCCAGTAAGTTGAGAAACAGAAATACTACA GAACATACTGATTTGGAAGTTGAAGGTCAATCAGGAAAAACAGATGAACAGGCTGAGACT GATGCTTGTAAGTTGTCTGCAGAAGATGATTCTGCATCAGCTCCAGCTGTTGACAAAGCT GCTAACAATTTATCTGCTTTTGGAGACTCTGTGGATACCGAACCACTACCTCCTGTGCAA TTTTACGCCCTAGACAGTGATCAGCATGTACTTGATGTATGGAAACCTTCTGTAATTATC GTTTATCATCCAGATATAACATTTGTTAGAGAAATTGAAGTATACAAGGCAGAAAATCCA TCGATGAAGTTAAAAGTTTACTTTCTTTTTTATGAAGATTCTGCCGAGGTACAAAAATTT GAGTCCAGCATTCGCCGGGAAAATGAAGCATTTGAATCTTTGATCAGACAGAAGTCGCTG ATGATGATACCTGTTGATCAGAATGGCCGTTGCATTGGACCAACTCTTGCAAATGAACCA GAAGCTCTTTTATCTCAAAATTCACTAACAAGAAAGGCAGGTGGTAGAAAGCCACTAGAG AAGGAGATGCAGGTTATTGTGGACATGAGAGAATTCATGAGCAGTCTTCCTAATGTATTG CACCAGAAAGGTATTCGAATAATACCTGTTACCTTGGAAGTCGGTGACTATGTTCTTTCT CCTTTGATCTGTGTCGAACGAAAAAGTATTGCGGACTTGTTCCAAAGCTTTGCTTCTGGT CGTCTCTACAATCAGATTGAAACCATGGTTCGGTATTACAAGATCCCAGTGCTTCTGATA GAATTCTCACAAGACAAGAGCTTTTCCTTTCAGTCTGCAAGTGAAATTGGGGATGATGTA TCTCCGACAAATATAATCTCAAAACTTTCATTACTAGTCCTGCATTTTCCTCGGCTTCGC ATAGTCTGGTCTCGCAGCTTGCATGCCACGGCAGATATATTCCTATCACTCAAAACAAAC CAGGATGAACCTGATGAGAGCAAGGCAATGAGAGTTGGTGTGCCCTCTGAGGACGGAGTT GTGGAGAATGACGTGAGGGCTGAAAATTACAATACGTCCGCGATTGAATTCTTGAGGAGG CTTCCTGGTGTGACAGATTCAAACTATAGAAGAATAATGGAGGAATGCAATAGCTTAGCA GAGCTGGCCCTGCTTCCGGTAGAGCGGCTGTCTGAGTTGATGGGTACTCAGAAAGGGGCA CGCATGCTCAAGGAATTTCTCGATGCCAAGTGTCCAACTATGCTCTAG

Peptide Sequence

PEP ID	Os03t0100400-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:66406:71674:1 gene:Os03g0100400 transcript:Os03t0100400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:XPF (Rad1), XPF, Rad1 description:Similar to DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet hypersensitive 1) (AtRAD1) (DNA excision repair protein XP-F homolog). (Os03t0100400-01)
Sequence	MLPFEEQVVADLLEDPNGGLVVVSCGLPVASLASAVLLQLFHQSPDDGCFLILSAPEPVK AQIRRRLLLNSQSQPPLLQLQVHDVAPDLPAHHRVALYASRAALFLSPRALVADFLTSRL LPSRVRALLLLSAHRSSDTSSDAFVARLLRHHHLLPVYAFSDRPHAMVSGFAKAERAMKS LYIRRLHLWPRFHLLAAADLERSPPEVIDVRVPMTQPMRGIQAAILDAMDACLKELRRTN KVDVEDLTVDKGLFKSFDEIVRRQLDPIWHTLGKKTKQLVADLRTLRKLLDYLVRYDAVT YLKYLDTLRVSEGVRSVWIFADSSHKIFDLSKRRVYQVVRADGTKVAADNKGTPTKKRKV ARASSRKGKETENEGSSDNKDNTQKVNAEMGIVVEEILEEAPKWKVLRELLQEIAEEQAK GDGDNVNPVHEDGINESGIVLVACKDERSCVQLQECISKGSHQVMRAEWEKYLLGKAELH GLHRKNKKTSQQLKGFGVLDGEVPMRSGESAGPVSISKVEANALLAAASEISTVTKEANL ADDSNVSCKKRSFGKGKGKGKFKKTMAKREASKLRNRNTTEHTDLEVEGQSGKTDEQAET DACKLSAEDDSASAPAVDKAANNLSAFGDSVDTEPLPPVQFYALDSDQHVLDVWKPSVII VYHPDITFVREIEVYKAENPSMKLKVYFLFYEDSAEVQKFESSIRRENEAFESLIRQKSL MMIPVDQNGRCIGPTLANEPEALLSQNSLTRKAGGRKPLEKEMQVIVDMREFMSSLPNVL HQKGIRIIPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQIETMVRYYKIPVLLI EFSQDKSFSFQSASEIGDDVSPTNIISKLSLLVLHFPRLRIVWSRSLHATADIFLSLKTN QDEPDESKAMRVGVPSEDGVVENDVRAENYNTSAIEFLRRLPGVTDSNYRRIMEECNSLA ELALLPVERLSELMGTQKGARMLKEFLDAKCPTML

Transcript Sequence

Transcript ID	Os03t0100400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:66406:71674:1 gene:Os03g0100400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:XPF (Rad1), XPF, Rad1 description:Similar to DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet hypersensitive 1) (AtRAD1) (DNA excision repair protein XP-F homolog). (Os03t0100400-01)
Sequence	GTTCTCCCTCCTCCTCACTCGGAAAGGAAAAGAGCGCCGCCGCCGCCGGCGTGATGCTTC CCTTCGAGGAGCAGGTGGTGGCGGACCTCCTGGAGGACCCCAACGGCGGCCTGGTGGTGG TTTCGTGTGGCCTCCCGGTGGCCTCCCTGGCGTCCGCCGTCCTCCTCCAGCTCTTCCACC AATCCCCCGACGATGGCTGCTTCCTGATCCTCTCCGCCCCCGAGCCGGTCAAAGCTCAAA TCCGGCGGCGCCTCCTCCTCAACTCCCAGAGCCAGCCTCCTCTCTTGCAGCTGCAGGTCC ACGACGTGGCCCCCGACCTCCCCGCCCACCACCGCGTCGCCCTCTACGCCTCCCGCGCCG CGCTCTTCCTCTCCCCCCGCGCCCTCGTCGCCGACTTCCTCACCTCCCGCCTCCTCCCCT CCCGCGTCCGCGCCCTCCTCCTCCTCTCCGCCCACCGCTCCTCCGACACCTCCTCCGACG CCTTCGTGGCTCGCCTCCTCCGCCACCACCACCTCCTCCCTGTTTATGCCTTCTCCGATC GCCCCCATGCCATGGTCTCCGGCTTCGCCAAGGCGGAGCGCGCTATGAAGAGCCTCTACA TTCGACGCCTCCACCTTTGGCCCCGCTTCCACCTTCTTGCTGCCGCTGACCTCGAGCGCT CCCCGCCCGAGGTCATCGACGTCCGCGTCCCCATGACTCAGCCTATGAGGGGCATCCAGG CCGCTATCCTCGATGCCATGGACGCCTGCCTCAAGGAGCTCAGGCGGACCAACAAGGTCG ACGTCGAAGACCTCACCGTCGACAAGGGCCTCTTCAAGTCTTTTGATGAGATCGTCAGGA GGCAGCTCGACCCCATCTGGCACACGCTCGGCAAGAAGACCAAGCAGCTCGTCGCCGACC TCAGGACGCTACGCAAGCTGCTTGATTATCTTGTCAGGTACGATGCTGTGACATACCTTA AGTACCTGGACACACTCAGAGTATCTGAAGGCGTCCGATCTGTTTGGATATTTGCTGACT CAAGCCACAAGATATTCGACCTTTCAAAAAGGCGTGTCTACCAGGTTGTGAGAGCAGACG GTACAAAGGTTGCAGCAGACAACAAGGGCACACCAACAAAGAAGAGGAAGGTGGCACGCG CTAGCAGCAGGAAAGGAAAAGAAACTGAAAATGAGGGTTCCAGTGATAACAAGGACAATA CTCAGAAGGTTAATGCAGAGATGGGCATTGTAGTGGAGGAGATTTTAGAGGAAGCACCTA AATGGAAGGTTTTACGGGAACTATTGCAGGAGATAGCAGAAGAACAGGCAAAGGGAGATG GTGACAATGTAAACCCTGTTCATGAAGACGGAATTAACGAGAGTGGCATAGTTTTGGTAG CATGCAAAGATGAGCGCTCATGCGTGCAGCTGCAAGAATGCATATCAAAAGGCTCGCATC AGGTCATGCGGGCCGAGTGGGAGAAGTACTTGCTTGGCAAAGCTGAACTGCATGGATTGC ATAGGAAGAACAAGAAAACATCTCAGCAACTAAAAGGGTTTGGTGTTCTGGATGGGGAAG TTCCTATGAGGTCTGGTGAGAGTGCAGGTCCTGTTAGCATTAGCAAGGTTGAGGCTAATG CCTTACTTGCGGCTGCCTCTGAAATAAGCACTGTAACTAAGGAAGCAAATCTTGCTGATG ATTCAAATGTCAGCTGCAAGAAGAGATCATTCGGAAAAGGGAAAGGGAAAGGGAAATTTA AGAAAACCATGGCAAAGAGAGAAGCCAGTAAGTTGAGAAACAGAAATACTACAGAACATA CTGATTTGGAAGTTGAAGGTCAATCAGGAAAAACAGATGAACAGGCTGAGACTGATGCTT GTAAGTTGTCTGCAGAAGATGATTCTGCATCAGCTCCAGCTGTTGACAAAGCTGCTAACA ATTTATCTGCTTTTGGAGACTCTGTGGATACCGAACCACTACCTCCTGTGCAATTTTACG CCCTAGACAGTGATCAGCATGTACTTGATGTATGGAAACCTTCTGTAATTATCGTTTATC ATCCAGATATAACATTTGTTAGAGAAATTGAAGTATACAAGGCAGAAAATCCATCGATGA AGTTAAAAGTTTACTTTCTTTTTTATGAAGATTCTGCCGAGGTACAAAAATTTGAGTCCA GCATTCGCCGGGAAAATGAAGCATTTGAATCTTTGATCAGACAGAAGTCGCTGATGATGA TACCTGTTGATCAGAATGGCCGTTGCATTGGACCAACTCTTGCAAATGAACCAGAAGCTC TTTTATCTCAAAATTCACTAACAAGAAAGGCAGGTGGTAGAAAGCCACTAGAGAAGGAGA TGCAGGTTATTGTGGACATGAGAGAATTCATGAGCAGTCTTCCTAATGTATTGCACCAGA AAGGTATTCGAATAATACCTGTTACCTTGGAAGTCGGTGACTATGTTCTTTCTCCTTTGA TCTGTGTCGAACGAAAAAGTATTGCGGACTTGTTCCAAAGCTTTGCTTCTGGTCGTCTCT ACAATCAGATTGAAACCATGGTTCGGTATTACAAGATCCCAGTGCTTCTGATAGAATTCT CACAAGACAAGAGCTTTTCCTTTCAGTCTGCAAGTGAAATTGGGGATGATGTATCTCCGA CAAATATAATCTCAAAACTTTCATTACTAGTCCTGCATTTTCCTCGGCTTCGCATAGTCT GGTCTCGCAGCTTGCATGCCACGGCAGATATATTCCTATCACTCAAAACAAACCAGGATG AACCTGATGAGAGCAAGGCAATGAGAGTTGGTGTGCCCTCTGAGGACGGAGTTGTGGAGA ATGACGTGAGGGCTGAAAATTACAATACGTCCGCGATTGAATTCTTGAGGAGGCTTCCTG GTGTGACAGATTCAAACTATAGAAGAATAATGGAGGAATGCAATAGCTTAGCAGAGCTGG CCCTGCTTCCGGTAGAGCGGCTGTCTGAGTTGATGGGTACTCAGAAAGGGGCACGCATGC TCAAGGAATTTCTCGATGCCAAGTGTCCAACTATGCTCTAGGGCTGTGTAATCTTGTTTG TAATTGTTGAAAATGATCAATAATGAACTTATTATTCTACTTAGTAAAACCGATTTT