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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0820500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:35227503:35228609:-1 gene:Os02g0820500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEGENERATED HULL 1 description:Similar to LOB domain protein 17. (Os02t0820500-01)
Sequence

ATGGCTGGTGCTACGGCTGCCGGCGCTGCCGCTGCCGCGGCGGGGACGGGAGCCGGGTCG
CCGTGCGGCGCGTGCAAGTTCTTGCGGCGGCGGTGCGTGCCGGAGTGCGTGTTCGCGCCC
TACTTCAGCTCGGAGCAAGGGGCGGCGAGGTTCGCGGCGATCCACAAGGTGTTCGGCGCC
AGCAACGCCTCCAAGCTCCTCTCCCACCTCCCCGTCGCCGACCGCTGCGAGGCCGTCGTC
ACCATCACCTACGAGGCCCAGGCCAGGCTCCGCGACCCCGTCTATGGCTGCGTCGCCCAA
ATCTTCGCCCTCCAGCAGCAGGTCGCGATCCTGCAAGCGCAGCTGATGCAGGCGAGGGCG
CAGCTGGCGTGCGGCATCCAGAGCAGCTCGCACTCTCCGGTGAGCTGGCCGGACAGCGGC
AGCATCAGCGCGCTACTCCGGCAGGACATGGCGAGAAGGCCGCCCGGCGGCGCCCTCGAC
GACTGCTTCGGCGGCGGCGGCGCGCTGCTGCCGGAGCTCATGGCGGCCGGCTTCAAGGAC
GACGTCGCCGCCGTGCAGATGCAGCAGCATTGCTCCAAGGCGGTGGACGCCGGCGAGCTC
CAGTATCTGGCCCAGGCGATGATGAGATCAACCTCCAACTACTCTCAGTAG

Peptide Sequence

PEP ID

Os02t0820500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:35227503:35228609:-1 gene:Os02g0820500 transcript:Os02t0820500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEGENERATED HULL 1 description:Similar to LOB domain protein 17. (Os02t0820500-01)
Sequence

MAGATAAGAAAAAAGTGAGSPCGACKFLRRRCVPECVFAPYFSSEQGAARFAAIHKVFGA
SNASKLLSHLPVADRCEAVVTITYEAQARLRDPVYGCVAQIFALQQQVAILQAQLMQARA
QLACGIQSSSHSPVSWPDSGSISALLRQDMARRPPGGALDDCFGGGGALLPELMAAGFKD
DVAAVQMQQHCSKAVDAGELQYLAQAMMRSTSNYSQ

Transcript Sequence

Transcript ID

Os02t0820500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:35227503:35228609:-1 gene:Os02g0820500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEGENERATED HULL 1 description:Similar to LOB domain protein 17. (Os02t0820500-01)
Sequence

CTACTAGCAGCTAACCTACCTACACTACACTACACCACACACTACACTTGGAGAGAAGCA
CACGTAGCTAGAGTGATCGATTCATTTTCTTGCTCGATCTTGATCGGTATGGCTGGTGCT
ACGGCTGCCGGCGCTGCCGCTGCCGCGGCGGGGACGGGAGCCGGGTCGCCGTGCGGCGCG
TGCAAGTTCTTGCGGCGGCGGTGCGTGCCGGAGTGCGTGTTCGCGCCCTACTTCAGCTCG
GAGCAAGGGGCGGCGAGGTTCGCGGCGATCCACAAGGTGTTCGGCGCCAGCAACGCCTCC
AAGCTCCTCTCCCACCTCCCCGTCGCCGACCGCTGCGAGGCCGTCGTCACCATCACCTAC
GAGGCCCAGGCCAGGCTCCGCGACCCCGTCTATGGCTGCGTCGCCCAAATCTTCGCCCTC
CAGCAGCAGGTCGCGATCCTGCAAGCGCAGCTGATGCAGGCGAGGGCGCAGCTGGCGTGC
GGCATCCAGAGCAGCTCGCACTCTCCGGTGAGCTGGCCGGACAGCGGCAGCATCAGCGCG
CTACTCCGGCAGGACATGGCGAGAAGGCCGCCCGGCGGCGCCCTCGACGACTGCTTCGGC
GGCGGCGGCGCGCTGCTGCCGGAGCTCATGGCGGCCGGCTTCAAGGACGACGTCGCCGCC
GTGCAGATGCAGCAGCATTGCTCCAAGGCGGTGGACGCCGGCGAGCTCCAGTATCTGGCC
CAGGCGATGATGAGATCAACCTCCAACTACTCTCAGTAGAAAGAAAAATCAAACAATGCA
ACGCTTTGCATGCAGGAGTTAGAGAGTGGACAAGCAAAAATTTAGCCTGTGTACTACTGA
ACTTTTTTATCAGTGCAACGTCATAGTGAAGCAATTAGTCTGCTTCATGATGATGATTAG
TACGTAGTACTACTAAATAACACTAATAGCTTCTTGCAACAAGGTCTTGGTAATGACATC
ACACATCACTGGACCCTGGCCATGCATGCATGTCCAAGTAT