Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0820300-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:35218480:35221097:-1 gene:Os02g0820300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0820300-01)
Sequence

ATGGCTCTACGCCGAGCCGCCTCCCTCCTCCTCCGGCCACGGCTCCGAGCTCCCGTTCCG
ATCCCCACACCCAAAACCCCAAACCCTCTCCTCCTCCCGCCCCGCCGCCACTTCTCCCAG
CTCCCGCCGCCTCCAGTCCCCGCCTCCGCGGCCGCCGCCGCCGCGGCCGTTGCGGAGGAG
GCGGAGGAGGCCTTCGAGGCGGCGAAGGGGACCAAGGACCTGCTCGCCGCCTTCTCCCGC
CTCGAGGCCGTCATGCCGCCCTCCGACAAGCGCCTCGCCCTCGCCTGCATCAAGCTCGGC
CAGCACCTCGAGGCCTCCGGCGCTGCCGACCCCTCCCGCGTCCTCGCCCTCGCCCTCCGA
TCCCTCGGCATCCTCGAGGCCACCCCTAACTCCGCCACCTCGACGACGGCCTCCCACTCC
GATGCCGTCTCGCTCGCCATGGCCCTCCACCTCGCCGGCTCCGCCTCCTTCGACCTCTCC
CGCTTCCACGACGCACTCTCCTTCCTCACCCGCTCCCTCCGCCTCGTCTCCCCACTCCTC
CCCTCCTCCTCCTCCGCCGCCGCCGCCTCTGGTGACGACGACGCTCAAGGGTTCGACGTG
AGGCCCGTGGCGCACGCGGTGCGCCTGCAGCTGGCCAACGTGAAGACGGCGCTGGGGCGG
CGGGAGGAGGCCCTAGCTGACATGCGTGCGTGCCTTGACCTCAAGGAGTCCATCCTGCCG
CCGGGTAGCCGGGAGCTCGGCGCCGCGTACCGGGACCTTGCGGAGGCGTACTCCACCGTG
CTAGATTTCAAAGAGGCGCTCCCATTGTGCGAGAAGGCGCTCGAACTGCATCAGTCGACG
CTAGGCAAAAATTCGGTGGAGGTTGCGCATGATAGGCGGCTGCTTGGGGTGATATACACC
GGCCTGGAGCAGCATGAGCAGGCCCTGCAGCAGAATGAGATGTCACAGAAGGTGATGAAG
AGCTGGGGCGTGGCTGGCGACGAGCTCCTGCACGCGGAGATTGATGCGGCGAACATCAAG
ATCGCTTTGGGCAAGTGCGACGAGGCCGTTACTGTGTTGAGGAATGTCTCTAAGCAGGTG
GAGAAGGATAGCGAGATACGAGCTCTAGTGTTTATATCTATGGCAAAGGCTCTTGCTAAC
CAGGAGAAGGCCGGTGATACAAAGAGGTGCTTGGAGATTGCTTGTGACATACTGGAGAAG
AAGGAATTGGCTGCACCAGACAAGGTGGCCGAAGCATATGTGGAGGTATCCTCACTGTAT
GAGATGGTGAATGAGTTTGACAAAGCGATATCATTGCTGAAGAGGAGCTTGGGGATGCTT
GAGAGGATACCTCAGGCACAACACATGGAAGGGAATGTTGCGGCTCGGATTGGGTGGCTA
TTGCTTCTGACAGGGAAGGTGTCGGAGGCTGTCCCATACTTGGAGGATGCAGTGGAGAGG
ATGAAGGACAGCTTTGGACCAAAGCATTACGGGGTAGGGTATGTGTATAACAATTTGGGG
GCTGCATATATGGAGATCGGCCGACCACAGTCTGCTGCGCAGATGTTTGCGCTTGCAAAG
GAAGTCATGGATGTTTCCTTGGGGCCGCACCATTCAGATACCATAGAGGCCTGCCAGAGC
CTTGCCAATGCATACAACGCAATGGGAAGCTATGCTCTGGCTATGGAGTTCCAAAAGCGA
GTGGTGGATTCTTGGCGAAACCATGGTCCCAGTGCTAGGGACGAGCTCAAGGAAGCTATT
CGTCTCTATGAGCAGATAAAGATAAAGGCTCTTTCATGCCTATCGCCTGAAAATTCAGCA
ATTGCATTGCCTGAACCTCTGGAAAAGGAGGTTGATTCTGATTCTACCAGAGTTGCTCAA
CAATAA

Peptide Sequence

PEP ID

Os02t0820300-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:35218480:35221097:-1 gene:Os02g0820300 transcript:Os02t0820300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0820300-01)
Sequence

MALRRAASLLLRPRLRAPVPIPTPKTPNPLLLPPRRHFSQLPPPPVPASAAAAAAAVAEE
AEEAFEAAKGTKDLLAAFSRLEAVMPPSDKRLALACIKLGQHLEASGAADPSRVLALALR
SLGILEATPNSATSTTASHSDAVSLAMALHLAGSASFDLSRFHDALSFLTRSLRLVSPLL
PSSSSAAAASGDDDAQGFDVRPVAHAVRLQLANVKTALGRREEALADMRACLDLKESILP
PGSRELGAAYRDLAEAYSTVLDFKEALPLCEKALELHQSTLGKNSVEVAHDRRLLGVIYT
GLEQHEQALQQNEMSQKVMKSWGVAGDELLHAEIDAANIKIALGKCDEAVTVLRNVSKQV
EKDSEIRALVFISMAKALANQEKAGDTKRCLEIACDILEKKELAAPDKVAEAYVEVSSLY
EMVNEFDKAISLLKRSLGMLERIPQAQHMEGNVAARIGWLLLLTGKVSEAVPYLEDAVER
MKDSFGPKHYGVGYVYNNLGAAYMEIGRPQSAAQMFALAKEVMDVSLGPHHSDTIEACQS
LANAYNAMGSYALAMEFQKRVVDSWRNHGPSARDELKEAIRLYEQIKIKALSCLSPENSA
IALPEPLEKEVDSDSTRVAQQ

Transcript Sequence

Transcript ID

Os02t0820300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:35218480:35221097:-1 gene:Os02g0820300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0820300-01)
Sequence

CTCTCCTCTCATCCACGTAAACCACCCTCTCCCTCCCTCGCCGCCGGTAGCCGCCACCAC
CGCCGCCGCCGCGAACTTCCAATAGATCGCCGGCTCGCCATGGCTCTACGCCGAGCCGCC
TCCCTCCTCCTCCGGCCACGGCTCCGAGCTCCCGTTCCGATCCCCACACCCAAAACCCCA
AACCCTCTCCTCCTCCCGCCCCGCCGCCACTTCTCCCAGCTCCCGCCGCCTCCAGTCCCC
GCCTCCGCGGCCGCCGCCGCCGCGGCCGTTGCGGAGGAGGCGGAGGAGGCCTTCGAGGCG
GCGAAGGGGACCAAGGACCTGCTCGCCGCCTTCTCCCGCCTCGAGGCCGTCATGCCGCCC
TCCGACAAGCGCCTCGCCCTCGCCTGCATCAAGCTCGGCCAGCACCTCGAGGCCTCCGGC
GCTGCCGACCCCTCCCGCGTCCTCGCCCTCGCCCTCCGATCCCTCGGCATCCTCGAGGCC
ACCCCTAACTCCGCCACCTCGACGACGGCCTCCCACTCCGATGCCGTCTCGCTCGCCATG
GCCCTCCACCTCGCCGGCTCCGCCTCCTTCGACCTCTCCCGCTTCCACGACGCACTCTCC
TTCCTCACCCGCTCCCTCCGCCTCGTCTCCCCACTCCTCCCCTCCTCCTCCTCCGCCGCC
GCCGCCTCTGGTGACGACGACGCTCAAGGGTTCGACGTGAGGCCCGTGGCGCACGCGGTG
CGCCTGCAGCTGGCCAACGTGAAGACGGCGCTGGGGCGGCGGGAGGAGGCCCTAGCTGAC
ATGCGTGCGTGCCTTGACCTCAAGGAGTCCATCCTGCCGCCGGGTAGCCGGGAGCTCGGC
GCCGCGTACCGGGACCTTGCGGAGGCGTACTCCACCGTGCTAGATTTCAAAGAGGCGCTC
CCATTGTGCGAGAAGGCGCTCGAACTGCATCAGTCGACGCTAGGCAAAAATTCGGTGGAG
GTTGCGCATGATAGGCGGCTGCTTGGGGTGATATACACCGGCCTGGAGCAGCATGAGCAG
GCCCTGCAGCAGAATGAGATGTCACAGAAGGTGATGAAGAGCTGGGGCGTGGCTGGCGAC
GAGCTCCTGCACGCGGAGATTGATGCGGCGAACATCAAGATCGCTTTGGGCAAGTGCGAC
GAGGCCGTTACTGTGTTGAGGAATGTCTCTAAGCAGGTGGAGAAGGATAGCGAGATACGA
GCTCTAGTGTTTATATCTATGGCAAAGGCTCTTGCTAACCAGGAGAAGGCCGGTGATACA
AAGAGGTGCTTGGAGATTGCTTGTGACATACTGGAGAAGAAGGAATTGGCTGCACCAGAC
AAGGTGGCCGAAGCATATGTGGAGGTATCCTCACTGTATGAGATGGTGAATGAGTTTGAC
AAAGCGATATCATTGCTGAAGAGGAGCTTGGGGATGCTTGAGAGGATACCTCAGGCACAA
CACATGGAAGGGAATGTTGCGGCTCGGATTGGGTGGCTATTGCTTCTGACAGGGAAGGTG
TCGGAGGCTGTCCCATACTTGGAGGATGCAGTGGAGAGGATGAAGGACAGCTTTGGACCA
AAGCATTACGGGGTAGGGTATGTGTATAACAATTTGGGGGCTGCATATATGGAGATCGGC
CGACCACAGTCTGCTGCGCAGATGTTTGCGCTTGCAAAGGAAGTCATGGATGTTTCCTTG
GGGCCGCACCATTCAGATACCATAGAGGCCTGCCAGAGCCTTGCCAATGCATACAACGCA
ATGGGAAGCTATGCTCTGGCTATGGAGTTCCAAAAGCGAGTGGTGGATTCTTGGCGAAAC
CATGGTCCCAGTGCTAGGGACGAGCTCAAGGAAGCTATTCGTCTCTATGAGCAGATAAAG
ATAAAGGCTCTTTCATGCCTATCGCCTGAAAATTCAGCAATTGCATTGCCTGAACCTCTG
GAAAAGGAGGTTGATTCTGATTCTACCAGAGTTGCTCAACAATAATTTCAAAGTATTGTA
CGCATCAGTTTTTCTATCAATATATGATTATGATATGTTGTTTAGTAG