Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0817000-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:35041083:35046389:1 gene:Os02g0817000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-related domain containing protein. (Os02t0817000-01)
Sequence

ATGAGCAGCAAGTTCATGATAACCTACAAGAGGAAGCGTGTTACATCACATGTCTATACA
GCTGATGGCACCAATCTCAAGTCTTCTGGTGCTTCCAGTAGTGTTCCTGTCAGCAGTTTA
TCCCCAAAATATGGGGTTGGTGCCGATAATAACATGTTAGAGGAAGATAATTTTTCGACC
TCTACAAAGCAACAGGATGTATTTGATTCAAGGGAGCAAGTCATCAAGGAAGAATCACCT
AAACAAAGTGCAAATGCACCAGGCAAAGAACGAGCGGAACTTAAGTCACGTGAATCATTA
TCTCAAAAGGAACAGCCTGAGATATGTTCTACTCATACTGCAATAGGAGACGCATGTGAG
AATAAATTAGAATGCATAGATGGCACACATAATCAAAGTCTTGTTTCCAGTTGTGTGCAT
GCTGACAGGACAACTAATCAGGCAGAAGATTCTAGTGCCTCTGTTTCTGTGGGAGTAAAT
TCTCATCAGCAGCCGAATAATTCTACCAGGCCTAGCCAATCTAAGAGTAGATTTAGTCCT
ATGCTTACATTTCATAGGCGAGTTAAAAACAAAATAGGTTTGGAAGAGCCTGCAGCAGGA
AGTTGTTCAAGAGATAATGACAAACATTGCTCAAAACTAAGTTGCAACCCACCAAGTTCG
CCACTGGATGCTATACCCTTGTGTAGACAAACTGCTGGCAGTTCTTTGGATGTTGAAGAT
AAGGTTACTATAGCGGGAACAAGCACTGGACAATCTGTAATTGTTGACCACTTGCTTGAA
CAAAAAAGTTCACACATTCCGAAATCGTCGGTACATCATATGGTTCCCTCGCAGCCTGCT
AAAGATGCAAACCAAAGTTCAATCCCAGAAGAAGGTACACCAGTATCTGAGTTCACTAGG
GTGCTAGAAACCAGTGAGTCAGATGCAAGAGTGGAGGACTCAAACAGAACACCAGTAGAC
GCTATTGAAGTACCAAAAGTTATTGAAGTGAAGAGGGATGAACATGGTAATGGACAGACT
AATTGTCTACAGTCACCAAGGAAAAATATAAATGTTAATCTTCTGAAACCAACAAATAGA
TCTGAGGCAGCTGATCTTCTGGAGTCTCAAGATTCAACAAAAAATATTCCAATTATTGTC
TTGGACGATGATAGTGATGAGAGGGGCAAAGAGCAGGAAAAATCAGAGGTCCTTGATCAA
TTAATCCAGGAGAAAAATAAAGGTAGATTTTCTTTGGGGCAGATCAACCTAAATCTAAAT
TGTGCTGAATTACCACAAGAGAGGCTTCTCAGTTTGGATGAGACATCGGTGTACAAACTA
AAAGATCAGGATCAATGTGTTCATGAACGAAAGCAAATGTCCCATCCAGTTGAAAGGTTG
TTTTTTACAAAGGAGAAGGATGCCATGCACGGTAAAAAACATCATGAAGAAACCTCAACC
ATGCATAGCTCGTACTCAAATTTATTTGATCCAGCCCCATCATCGTCGTGGATTACTGGG
AATTTCAAGGAACCAAGTGTCATGCCATCAGAACTGAAGTTCAGAATATTGGATAAGGCT
CCTGAATTCAATTTAGATCTCAAATTGGATAGTTTCCCAGACAGTAGTGTATTAGCCCTT
AGGCACGATAAGTTATTTCGTGGAGGCACCTCCAGTGGATCCCATTTTCTGACAGAAAGG
CTTGGGACATACTCCTACAAAAGGCACTCTTCCCCGTGGTCAGAAGAAGAATTGGATTTT
CTTTGGATTGGAGTTAGGAGGTATGGGACAAATAACTGGAATGCAATGTTGAGGGATAGA
CGGTTACGGTTTTCTAACTCAAGAAATGCCGAGGATCTTGCTAAGCAATGGGACAAGGAA
CAAAGAAATCTTCTAGGTGTGGATTTCCTTCAATCACTCAGATCCTCTGCTCGAGGTCCT
CCACCGCCTTCACATATACCAGAAGATTACGTTGGAAGCAGTTCTTGGACTGGATGCTCA
AAATCTCCATTTCTTTCTGCTCCAACAGACCTTTCATTGGGTGACATGTACCTTCGAAGC
GCCCGTACTTCAGAGAGAGGGCAGCATCATTTATCAAACCTGGGCATGTTAAACCTACAT
GCAACCGACAATGTACCAAGAAATTTGTCTCTGGGAGGTTTCCCTGTTGCTTCCTCCCCA
TATGGGAGAAGTTCTAGCAAGCGTAGGAGGGCGTCCAAGCTTCCCAAGTCATACTATGAC
AACAAGGCAGTTTGGTGCCAAGATCCATCAGAGAGGGTGGCTCAGTTCCTTCCCATAAAC
CAGGAACCAATCAACAATCTTCCTGAGTGGCTGACAAAGGACGCCGAGATGGCGGGCGTA
CGCCGGCTTGATGCAGATCTGTGGCCGAGCATGCAGGCTCCGGGTCATTCTGCAGCAGAC
CGACTGAATGAAATGAAGCCTCATGTTCTTCCTGATGGATCACTGAAGCGTGCGCCCAAG
AGGAAGGCGGAGTGGCGCGCCTTCAGCAAGAAACTGTTCAAGTCCGGCGATGGCGCCCTG
GATCTAAACCAGAGGGCTGCTGCCATCGCCGGACCCCTCGGTGCCATTGGGACTAGTGAC
ACCGGTGCATCGTCTGAAGAGACGGTTTCAGACAGTTGA

Peptide Sequence

PEP ID

Os02t0817000-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:35041083:35046389:1 gene:Os02g0817000 transcript:Os02t0817000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-related domain containing protein. (Os02t0817000-01)
Sequence

MSSKFMITYKRKRVTSHVYTADGTNLKSSGASSSVPVSSLSPKYGVGADNNMLEEDNFST
STKQQDVFDSREQVIKEESPKQSANAPGKERAELKSRESLSQKEQPEICSTHTAIGDACE
NKLECIDGTHNQSLVSSCVHADRTTNQAEDSSASVSVGVNSHQQPNNSTRPSQSKSRFSP
MLTFHRRVKNKIGLEEPAAGSCSRDNDKHCSKLSCNPPSSPLDAIPLCRQTAGSSLDVED
KVTIAGTSTGQSVIVDHLLEQKSSHIPKSSVHHMVPSQPAKDANQSSIPEEGTPVSEFTR
VLETSESDARVEDSNRTPVDAIEVPKVIEVKRDEHGNGQTNCLQSPRKNINVNLLKPTNR
SEAADLLESQDSTKNIPIIVLDDDSDERGKEQEKSEVLDQLIQEKNKGRFSLGQINLNLN
CAELPQERLLSLDETSVYKLKDQDQCVHERKQMSHPVERLFFTKEKDAMHGKKHHEETST
MHSSYSNLFDPAPSSSWITGNFKEPSVMPSELKFRILDKAPEFNLDLKLDSFPDSSVLAL
RHDKLFRGGTSSGSHFLTERLGTYSYKRHSSPWSEEELDFLWIGVRRYGTNNWNAMLRDR
RLRFSNSRNAEDLAKQWDKEQRNLLGVDFLQSLRSSARGPPPPSHIPEDYVGSSSWTGCS
KSPFLSAPTDLSLGDMYLRSARTSERGQHHLSNLGMLNLHATDNVPRNLSLGGFPVASSP
YGRSSSKRRRASKLPKSYYDNKAVWCQDPSERVAQFLPINQEPINNLPEWLTKDAEMAGV
RRLDADLWPSMQAPGHSAADRLNEMKPHVLPDGSLKRAPKRKAEWRAFSKKLFKSGDGAL
DLNQRAAAIAGPLGAIGTSDTGASSEETVSDS

Transcript Sequence

Transcript ID

Os02t0817000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:35041083:35046389:1 gene:Os02g0817000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-related domain containing protein. (Os02t0817000-01)
Sequence

ATTCCCTTCCACCCTCTCCCACCCTTTAAAAAAATAATACAAAAATAAGAAAAAGAAGGA
GAAGAAGGGAGATTCTCTCTCTCTCTCCTCCTCCCGCTCCCGAATTCCTTCTAGATTATC
CCAAATTCTTCGCTGCCAAGCCGCCATCCCGCGGAATCGAGGGATGAGCAGCAAGTTCAT
GATAACCTACAAGAGGAAGCGTGTTACATCACATGTCTATACAGCTGATGGCACCAATCT
CAAGTCTTCTGGTGCTTCCAGTAGTGTTCCTGTCAGCAGTTTATCCCCAAAATATGGGGT
TGGTGCCGATAATAACATGTTAGAGGAAGATAATTTTTCGACCTCTACAAAGCAACAGGA
TGTATTTGATTCAAGGGAGCAAGTCATCAAGGAAGAATCACCTAAACAAAGTGCAAATGC
ACCAGGCAAAGAACGAGCGGAACTTAAGTCACGTGAATCATTATCTCAAAAGGAACAGCC
TGAGATATGTTCTACTCATACTGCAATAGGAGACGCATGTGAGAATAAATTAGAATGCAT
AGATGGCACACATAATCAAAGTCTTGTTTCCAGTTGTGTGCATGCTGACAGGACAACTAA
TCAGGCAGAAGATTCTAGTGCCTCTGTTTCTGTGGGAGTAAATTCTCATCAGCAGCCGAA
TAATTCTACCAGGCCTAGCCAATCTAAGAGTAGATTTAGTCCTATGCTTACATTTCATAG
GCGAGTTAAAAACAAAATAGGTTTGGAAGAGCCTGCAGCAGGAAGTTGTTCAAGAGATAA
TGACAAACATTGCTCAAAACTAAGTTGCAACCCACCAAGTTCGCCACTGGATGCTATACC
CTTGTGTAGACAAACTGCTGGCAGTTCTTTGGATGTTGAAGATAAGGTTACTATAGCGGG
AACAAGCACTGGACAATCTGTAATTGTTGACCACTTGCTTGAACAAAAAAGTTCACACAT
TCCGAAATCGTCGGTACATCATATGGTTCCCTCGCAGCCTGCTAAAGATGCAAACCAAAG
TTCAATCCCAGAAGAAGGTACACCAGTATCTGAGTTCACTAGGGTGCTAGAAACCAGTGA
GTCAGATGCAAGAGTGGAGGACTCAAACAGAACACCAGTAGACGCTATTGAAGTACCAAA
AGTTATTGAAGTGAAGAGGGATGAACATGGTAATGGACAGACTAATTGTCTACAGTCACC
AAGGAAAAATATAAATGTTAATCTTCTGAAACCAACAAATAGATCTGAGGCAGCTGATCT
TCTGGAGTCTCAAGATTCAACAAAAAATATTCCAATTATTGTCTTGGACGATGATAGTGA
TGAGAGGGGCAAAGAGCAGGAAAAATCAGAGGTCCTTGATCAATTAATCCAGGAGAAAAA
TAAAGGTAGATTTTCTTTGGGGCAGATCAACCTAAATCTAAATTGTGCTGAATTACCACA
AGAGAGGCTTCTCAGTTTGGATGAGACATCGGTGTACAAACTAAAAGATCAGGATCAATG
TGTTCATGAACGAAAGCAAATGTCCCATCCAGTTGAAAGGTTGTTTTTTACAAAGGAGAA
GGATGCCATGCACGGTAAAAAACATCATGAAGAAACCTCAACCATGCATAGCTCGTACTC
AAATTTATTTGATCCAGCCCCATCATCGTCGTGGATTACTGGGAATTTCAAGGAACCAAG
TGTCATGCCATCAGAACTGAAGTTCAGAATATTGGATAAGGCTCCTGAATTCAATTTAGA
TCTCAAATTGGATAGTTTCCCAGACAGTAGTGTATTAGCCCTTAGGCACGATAAGTTATT
TCGTGGAGGCACCTCCAGTGGATCCCATTTTCTGACAGAAAGGCTTGGGACATACTCCTA
CAAAAGGCACTCTTCCCCGTGGTCAGAAGAAGAATTGGATTTTCTTTGGATTGGAGTTAG
GAGGTATGGGACAAATAACTGGAATGCAATGTTGAGGGATAGACGGTTACGGTTTTCTAA
CTCAAGAAATGCCGAGGATCTTGCTAAGCAATGGGACAAGGAACAAAGAAATCTTCTAGG
TGTGGATTTCCTTCAATCACTCAGATCCTCTGCTCGAGGTCCTCCACCGCCTTCACATAT
ACCAGAAGATTACGTTGGAAGCAGTTCTTGGACTGGATGCTCAAAATCTCCATTTCTTTC
TGCTCCAACAGACCTTTCATTGGGTGACATGTACCTTCGAAGCGCCCGTACTTCAGAGAG
AGGGCAGCATCATTTATCAAACCTGGGCATGTTAAACCTACATGCAACCGACAATGTACC
AAGAAATTTGTCTCTGGGAGGTTTCCCTGTTGCTTCCTCCCCATATGGGAGAAGTTCTAG
CAAGCGTAGGAGGGCGTCCAAGCTTCCCAAGTCATACTATGACAACAAGGCAGTTTGGTG
CCAAGATCCATCAGAGAGGGTGGCTCAGTTCCTTCCCATAAACCAGGAACCAATCAACAA
TCTTCCTGAGTGGCTGACAAAGGACGCCGAGATGGCGGGCGTACGCCGGCTTGATGCAGA
TCTGTGGCCGAGCATGCAGGCTCCGGGTCATTCTGCAGCAGACCGACTGAATGAAATGAA
GCCTCATGTTCTTCCTGATGGATCACTGAAGCGTGCGCCCAAGAGGAAGGCGGAGTGGCG
CGCCTTCAGCAAGAAACTGTTCAAGTCCGGCGATGGCGCCCTGGATCTAAACCAGAGGGC
TGCTGCCATCGCCGGACCCCTCGGTGCCATTGGGACTAGTGACACCGGTGCATCGTCTGA
AGAGACGGTTTCAGACAGTTGAGTGTATCTCTAGTAGTAGTGATTTAGTCCAGAAAACCT
TGTGTCAGTCTGAAGCTGCCTGTATGATTCCGCTGCTGAAGCTGGTAAACAGTAGCAGTA
TGATCAAAGGTAAAATCGAGTTAAATTTCAGCCAAGTGATTGGATTCAGTTTTTGTAAAC
ATGCATCGATCTGAATTCTGATTACATCCTGTGTAATATATTATTGGCTTGTGTAATCCA
AAAAGATTGAACCATATATGCTCGCATGCTGAAAAGGAATTGCGAGTTTTTGTG