Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0815600-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:34934560:34936977:-1 gene:Os02g0815600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Diphthamide synthesis, DHP1 domain containing protein. (Os02t0815600-01)
Sequence

ATGGACGCCGGCGAGACCTCCACCTCGGACTCGCTGGTACTTGCCACGGGCGCCGCGCAG
GGACCAAAGAGGAAGCCGCCCCCGAAGCGCTTCGTCCACACGCCCATCCCGCCCTCCATC
CTCTCCGACCCAACCCTCGCCGCTGCCGCCACCGGCCTCCTCCCGGCGGCGTACAACTTC
GAGCTCCCCAAGACGGCGCACCGCATCCGCTCCTCCGGCGCCCGCCGCACCGCGCTGCAG
CTTCCGGAGGGTTTGCTCCTCTTCTCCCTCCCGCTTTCCCACCTCCTCGCGCCCTTCCTC
GAGCCGGACCCCTCCAACGACGTCCTCATCCTCGCCGATCCCACCTACGGCGCGTGCTGC
CTCGCCGACCGCCCCGCCAAGGCGCTCGCCGCCGACGTGCTCGTCCACTACGGCCATTCC
TGCCTCGTCCCCGTCACCTCCTCCCTCCTCCCCGTGCTCTACGTCTTCGTCGAGATCCGT
GTCGACGCCCAACGCCTCGCCGACGCTGTCCGCGCCGCCTTCCCGGACCCCGCCGATGCG
CCCCGCCTCGCCATCGCCGGCACCGTGCAGTTCATTTCGGCAGTTCACGCAGCGCGTGAG
ATCCTCAGTCACGATGGTTACCAGGGCATCGTCGTGCCACAGGCAAAGCCGCTGTCCGCC
GGCGAGGTTCTTGGGTGCACAGCACCTGCCCTGAAAAGGTCCGAGGGGGTCGGAGCGGTG
GTGTTCGTCGCAGACGGGAGATTCCACCTCGAGGCATTCATGATTGCCAATCCCGGGGTC
AAGGCCTACCGCTTTGATCCATTCCTGGGTGTGCTTGTGCTGGAGGAGTATGACCATGTC
GGGATGAAGCAAGCGAGGAAGGAGGCGGTGCTGGCAGCAAGGAAGGCCAAGAGTTGGGGA
GTTATACTAGGCACCCTTGGGCGGCAGGGAAGCGTAAAAGTTCTCGACAGGGTGGTGGAG
CATTTGGAGGAGAAAGGGCTGGAACACACAGTAGTGCTCATGTCGGAGCTGTCCCCGGCA
AGGATGGAGCTGTTTGGGGATTCGGTGGATGCGTGGGTGCAGATTGCATGCCCACGTTTG
TCGATTGACTGGGGTGAAGGATTCAAGAAGCCAATGCTGACGACATTCGAGTTTGATGTT
GCACTGGGCTATGTTCCTGGATGGTGGGAGAAGGGGAGTAGGGAATGTGGCAGTGGAGAT
GCCACCGGTTGTTGTTCAGGATCAGGAACTTCCACAGATTGTGGTTGCAGCAATGGTGGT
TGTGCTGACAAGGACTTTGGGGGGGAGTACCCAATGGATTACTACTCTCAGGATGGAGGT
GATTGGAACAGCTGCTACATGAAGAAGAAGCCCTCTACTGGAGAGAGAAAGCTGCGAGTT
CGGATTGGCAGCAAAGTTCAAGTTGAGGATAAGCAACAAAGCTAA

Peptide Sequence

PEP ID

Os02t0815600-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:34934560:34936977:-1 gene:Os02g0815600 transcript:Os02t0815600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Diphthamide synthesis, DHP1 domain containing protein. (Os02t0815600-01)
Sequence

MDAGETSTSDSLVLATGAAQGPKRKPPPKRFVHTPIPPSILSDPTLAAAATGLLPAAYNF
ELPKTAHRIRSSGARRTALQLPEGLLLFSLPLSHLLAPFLEPDPSNDVLILADPTYGACC
LADRPAKALAADVLVHYGHSCLVPVTSSLLPVLYVFVEIRVDAQRLADAVRAAFPDPADA
PRLAIAGTVQFISAVHAAREILSHDGYQGIVVPQAKPLSAGEVLGCTAPALKRSEGVGAV
VFVADGRFHLEAFMIANPGVKAYRFDPFLGVLVLEEYDHVGMKQARKEAVLAARKAKSWG
VILGTLGRQGSVKVLDRVVEHLEEKGLEHTVVLMSELSPARMELFGDSVDAWVQIACPRL
SIDWGEGFKKPMLTTFEFDVALGYVPGWWEKGSRECGSGDATGCCSGSGTSTDCGCSNGG
CADKDFGGEYPMDYYSQDGGDWNSCYMKKKPSTGERKLRVRIGSKVQVEDKQQS

Transcript Sequence

Transcript ID

Os02t0815600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:34934560:34936977:-1 gene:Os02g0815600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Diphthamide synthesis, DHP1 domain containing protein. (Os02t0815600-01)
Sequence

CTGGAGAAGCAAACCCTCGCGCCGCCGCCGCTCTCTCCCACCCGCCGCCGCCGCCGCCAT
GGACGCCGGCGAGACCTCCACCTCGGACTCGCTGGTACTTGCCACGGGCGCCGCGCAGGG
ACCAAAGAGGAAGCCGCCCCCGAAGCGCTTCGTCCACACGCCCATCCCGCCCTCCATCCT
CTCCGACCCAACCCTCGCCGCTGCCGCCACCGGCCTCCTCCCGGCGGCGTACAACTTCGA
GCTCCCCAAGACGGCGCACCGCATCCGCTCCTCCGGCGCCCGCCGCACCGCGCTGCAGCT
TCCGGAGGGTTTGCTCCTCTTCTCCCTCCCGCTTTCCCACCTCCTCGCGCCCTTCCTCGA
GCCGGACCCCTCCAACGACGTCCTCATCCTCGCCGATCCCACCTACGGCGCGTGCTGCCT
CGCCGACCGCCCCGCCAAGGCGCTCGCCGCCGACGTGCTCGTCCACTACGGCCATTCCTG
CCTCGTCCCCGTCACCTCCTCCCTCCTCCCCGTGCTCTACGTCTTCGTCGAGATCCGTGT
CGACGCCCAACGCCTCGCCGACGCTGTCCGCGCCGCCTTCCCGGACCCCGCCGATGCGCC
CCGCCTCGCCATCGCCGGCACCGTGCAGTTCATTTCGGCAGTTCACGCAGCGCGTGAGAT
CCTCAGTCACGATGGTTACCAGGGCATCGTCGTGCCACAGGCAAAGCCGCTGTCCGCCGG
CGAGGTTCTTGGGTGCACAGCACCTGCCCTGAAAAGGTCCGAGGGGGTCGGAGCGGTGGT
GTTCGTCGCAGACGGGAGATTCCACCTCGAGGCATTCATGATTGCCAATCCCGGGGTCAA
GGCCTACCGCTTTGATCCATTCCTGGGTGTGCTTGTGCTGGAGGAGTATGACCATGTCGG
GATGAAGCAAGCGAGGAAGGAGGCGGTGCTGGCAGCAAGGAAGGCCAAGAGTTGGGGAGT
TATACTAGGCACCCTTGGGCGGCAGGGAAGCGTAAAAGTTCTCGACAGGGTGGTGGAGCA
TTTGGAGGAGAAAGGGCTGGAACACACAGTAGTGCTCATGTCGGAGCTGTCCCCGGCAAG
GATGGAGCTGTTTGGGGATTCGGTGGATGCGTGGGTGCAGATTGCATGCCCACGTTTGTC
GATTGACTGGGGTGAAGGATTCAAGAAGCCAATGCTGACGACATTCGAGTTTGATGTTGC
ACTGGGCTATGTTCCTGGATGGTGGGAGAAGGGGAGTAGGGAATGTGGCAGTGGAGATGC
CACCGGTTGTTGTTCAGGATCAGGAACTTCCACAGATTGTGGTTGCAGCAATGGTGGTTG
TGCTGACAAGGACTTTGGGGGGGAGTACCCAATGGATTACTACTCTCAGGATGGAGGTGA
TTGGAACAGCTGCTACATGAAGAAGAAGCCCTCTACTGGAGAGAGAAAGCTGCGAGTTCG
GATTGGCAGCAAAGTTCAAGTTGAGGATAAGCAACAAAGCTAATATCGTTGAAACGAGAT
ATCAAGAGCAGCTTCATGTTTCTTCAGAAGTTTTGACACCAGAGTTGAATAGTATTTTTG
ATCTTAGCACTGCCGTTACGAGTGCTGTGATATCTGTATCTGTACACAGATGTAAACTAC
TCGATCCTGCGCCACACTGTAATGCTGTGATGTTGTCTTCCCATAAAGGTGAAATGATTC
TAAGTTTATGGAGCAC