Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0815400-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:34926649:34929340:1 gene:Os02g0815400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tfm5 protein. (Os02t0815400-01)
Sequence

ATGGCCACGGCCGTCCTCCGCCGCCCACTCCTCGCCGCCGCCGCCGCCGCCGCCGCCGTC
TCCTCCACCTCCTCCTCCTTCCGCCCCTCCCGCTTCCATCTCCGGCGATGTAGATACCCA
CCCCCTGTATTCGCCGTCTCCTCCGACTCCCCAAAGCCGGTTACCTCCTCTTCTACCGGC
GGTGACAACCCCGACGAGGAGCCTGTCCTTCCCCTCTTGCAAGAACTCGCGGATTGCTTG
GTTCTCCCGCCCAAATTCCTGTCCCAGCTTCCCCGCGACCTTCGCCTCGATCTCAATGAT
GCGGCATTTGATCTCTCCAATGGGCCTGTTCTTGACGAGTGTGGCCAAGAGGTAGGTGAT
CTGCTGCTCAACCTTGCAAAGGCATGGGAGATGGCTGACACATCGACATCAAACAACCTT
GTCAAGCAACTTCCTTCAATGGAACCCTACTTGACCGGCAGTGCCAAATCAGCATTTGGC
AAGCGGCTGATGTCAGCTGGAAGGAGGTTTACGTCCATGGGACAATACGGCAAGGGAGAG
CTGAAGAAGATTGCTGAAACAATGAGCAAAACCGGTAAGCTGCTATCAAAACGTCCAGTA
GTTCAATCTGAAGTAGAGGCTATGAAAGTAAAAAGGAAATTGAAGTTTTTAGAACTTGAG
TTTGAGTTGACAGCAGAAAAGGCAAATATTGGAGCTGCAGTTGGACTTGTTTTCGGATTT
CTCTCATGGCAACTAGCACGTGGTATACAAAACATTCCAGACGGCTCAATGCAGTACGCA
AACGACAACGCGTTGCAGATGGCCAAGTCACTCAAGGTCTCACTGCTTGTTCTTGGCTAC
ACATCTACTGCCCTCTCTGTTTTCACATCAATCGGGCTGCTGTTGCTGGCGCAGCAGATC
AACTCTGATGACAAAACGGAGTAG

Peptide Sequence

PEP ID

Os02t0815400-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:34926649:34929340:1 gene:Os02g0815400 transcript:Os02t0815400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tfm5 protein. (Os02t0815400-01)
Sequence

MATAVLRRPLLAAAAAAAAVSSTSSSFRPSRFHLRRCRYPPPVFAVSSDSPKPVTSSSTG
GDNPDEEPVLPLLQELADCLVLPPKFLSQLPRDLRLDLNDAAFDLSNGPVLDECGQEVGD
LLLNLAKAWEMADTSTSNNLVKQLPSMEPYLTGSAKSAFGKRLMSAGRRFTSMGQYGKGE
LKKIAETMSKTGKLLSKRPVVQSEVEAMKVKRKLKFLELEFELTAEKANIGAAVGLVFGF
LSWQLARGIQNIPDGSMQYANDNALQMAKSLKVSLLVLGYTSTALSVFTSIGLLLLAQQI
NSDDKTE

Transcript Sequence

Transcript ID

Os02t0815400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:34926649:34929340:1 gene:Os02g0815400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tfm5 protein. (Os02t0815400-01)
Sequence

GAGGTGAAAAAAAAGCAGAGCGTTTTCGAATGGCCACGGCCGTCCTCCGCCGCCCACTCC
TCGCCGCCGCCGCCGCCGCCGCCGCCGTCTCCTCCACCTCCTCCTCCTTCCGCCCCTCCC
GCTTCCATCTCCGGCGATGTAGATACCCACCCCCTGTATTCGCCGTCTCCTCCGACTCCC
CAAAGCCGGTTACCTCCTCTTCTACCGGCGGTGACAACCCCGACGAGGAGCCTGTCCTTC
CCCTCTTGCAAGAACTCGCGGATTGCTTGGTTCTCCCGCCCAAATTCCTGTCCCAGCTTC
CCCGCGACCTTCGCCTCGATCTCAATGATGCGGCATTTGATCTCTCCAATGGGCCTGTTC
TTGACGAGTGTGGCCAAGAGGTAGGTGATCTGCTGCTCAACCTTGCAAAGGCATGGGAGA
TGGCTGACACATCGACATCAAACAACCTTGTCAAGCAACTTCCTTCAATGGAACCCTACT
TGACCGGCAGTGCCAAATCAGCATTTGGCAAGCGGCTGATGTCAGCTGGAAGGAGGTTTA
CGTCCATGGGACAATACGGCAAGGGAGAGCTGAAGAAGATTGCTGAAACAATGAGCAAAA
CCGGTAAGCTGCTATCAAAACGTCCAGTAGTTCAATCTGAAGTAGAGGCTATGAAAGTAA
AAAGGAAATTGAAGTTTTTAGAACTTGAGTTTGAGTTGACAGCAGAAAAGGCAAATATTG
GAGCTGCAGTTGGACTTGTTTTCGGATTTCTCTCATGGCAACTAGCACGTGGTATACAAA
ACATTCCAGACGGCTCAATGCAGTACGCAAACGACAACGCGTTGCAGATGGCCAAGTCAC
TCAAGGTCTCACTGCTTGTTCTTGGCTACACATCTACTGCCCTCTCTGTTTTCACATCAA
TCGGGCTGCTGTTGCTGGCGCAGCAGATCAACTCTGATGACAAAACGGAGTAGCTGCCTA
CCAGTTGTCTGAAACTGTCGATGTGCCATTGTGTGTGCTCTAATCAGTGGATCATGATTT
CATGACACATTCATAGCGTTCTGTTGTACCAGTGTAATTAGCAACGCAACTGGATAATCT
GTGTATAAATTACGGAATGTTTCTGTACAAGAATTTTAAGTTC