Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0813800-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:34862557:34872880:-1 gene:Os02g0813800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-58 description:Similar to STYLOSA protein. (Os02t0813800-01);Non-protein coding transcript. (Os02t0813800-02)
Sequence

ATGGCGCAGAGCAACTGGGAAGCAGATAAGATGCTTGATGTGTATATCTATGACTATCTG
CTGAAGAGGAACTTGCAGTCGACGGCCAAGGCTTTCATGGCGGAGGGAAAGGTCGCCGCT
GATCCAGTCGCAATTGATGCTCCTGGAGGGTTTCTCTTTGAGTGGTGGTCTGTTTTTTGG
GATATATTTATTGCAAGAACAAATGAGAAGCATTCTGAGGTTGCAGCGGCATACCTAGAG
GCACAGCAAATCAAAGCGAGAGAGCACCAACAGCAGATGCAGATGCAGCAGTTGCAACTA
ATACAACACAGACATGCTCAACTGCAGCGAACTAATGCAAGTCATCCTTCACTTAATGGT
CCAATAAACACCCTAAATTCTGATGGCATTCTGGGGCATTCAACAGCTAGTGTTTTGGCT
GCCAAGATGTATGAAGAGCGCTTGAAGCACCCTCAATCCTTGGACTCTGAGGGATCACAG
CTTCTTGATGCTAGTAGGATGGCTCTTCTCAAGTCAGCTGCAACAAATCATGCAGGGCAA
TTAGTTCCCGGAACTCCCGGAAATGTGTCTACAACGCTGCAACAAATCCAGTCTAGGAAT
CAACAAACTATGGATATAAAAAGTGAAGGTAATATGGGTGTTGCCCAAAGATCTTTGCCC
ATGGACCCATCATCCTTATATGGACAGGGTATTATTCAGCCAAAACCTGGATTGGGCGGT
GCAGGACTAAACCAAGGAGTAAGCGGTCTACCATTGAAAGGGTGGCCATTAACTGGAATT
GACCAATTGCGACCAAATTTAGGTGCTCAAATGCAGAAGCCATTTCTTTCAACACAGTCA
CAGTTTCAACTTATGTCACCACAGCAGCAGCAACAATTCTTAGCACAGGCCCAAGCACAA
GGCAATCTTAGCAACTCAAGTAACTATGGGGATTTGGATCCCCGGAGATATACAGCACTA
ACCAGGGGTGGCTTGAATGGTAAGGATGGACAGCCTGCTGGAACTGATGGGTGTATTAGT
TCCCCAATGCAATCCAGTTCACCCAAAGTTAGGTCAGACCAAGAGTATCTCATAAAGGTA
CAACAGACATCTTCCCAGCAACCGCAGGAACAGCAGCAGCAGCAGAGCCAGCAACAACAG
CAGCAGCAAAGCCAGCAACAGCAAATGCAACAGAGCAATAGAAAAAGAAAGCAACCTACA
TCTTCAGGAGCAGCAAATAGTACTGGAACAGGGAATACAGTTGGCCCTTCAACCAATTCT
CCACCATCTACTCCATCCACGCATACCCCAGGAGATGGACTTGGGATGCCTGGCAATATG
CGCCACGTCCCGAAAAATTTAGTGATGTATGGTGCTGACGGAACAGGACTAGCATCCTCT
TCAAACCAAATGGATGATCTCGAGCCATTTGGTGATGTTGGCTCTTTGGAAGATAATGTT
GAATCATTCTTAGCCAATGATGATGGAGATGCAAGGGATATTTTTGCTGCACTTAAAAGA
AGTCCTGCAGAGCCTAACCCAGCGGCTTCAAAAGGTTTTACCTTCAATGAGGTTAATTGT
TTGCGCACGAACAATAGCAAAGTTGTCTGTTGCCATTTTTCTTCAGATGGCAAGATATTG
GCTAGCGCTGGACATGAAAAGAAGGCTGTACTTTGGAACATGGACACCTTCCAGAGCCAG
TATACATCAGAAGAACACAGCCTCATAATTACTGATGTCCGTTTCCGGCCTAATTCTTCC
CAGCTGGCAACATCATCCTTTGATAGAACTATTAAGCTGTGGAATGCTGCAGATCCTGGA
TTCTGTTTGCATACGTTTGTTGGGCATAATGTCCAAGTCACATCTTTAGATTTTCATCCA
AAGAAGACGGACCTTTTGTGCTCTTGTGATGGCAATGGTGAAATCCGGTACTGGAATCTG
ACCCAGCTTAGCTGCATGCGTGCCATGAAGGGAGGTACTGCCCAAGTTCGATTCCAACCT
AACACTGGACAGTTTCTCGCAGCTGCTGCGGAGACTATGGTTGCCATTTTTGATGTTGAA
ACGCACAGCAAAAAATACACACTACAGGGCCATAACACAGATGTGCAATCAGTGTGTTGG
GACAGCAGTGGGGAGTACCTTGCCTCTGTCAGTCAGGACTTGGTTAAGGTCTGGTCAATA
TCATCAGGAGAGTGCATTCATGAGGTTAGCTCCAATGGAAACAAGTTCCACTCTTGTGTG
TTCCACCCAAGCTATGCCAATCTCCTTGTTATTGGAGGCTACCAGTCCCTGGAGCTATGG
AACATGGTAAAGAACCAGAGCATGACGATACAAGCCCATGAAGGTCTAATTGCGGCCTTG
GCGCAATCGCCAGTGAACGGGACGGTGGCTTCTGCGAGCCACGACAACTCTGTCAAGTTG
TGGAAGTAA

Peptide Sequence

PEP ID

Os02t0813800-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:34862557:34872880:-1 gene:Os02g0813800 transcript:Os02t0813800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-58 description:Similar to STYLOSA protein. (Os02t0813800-01);Non-protein coding transcript. (Os02t0813800-02)
Sequence

MAQSNWEADKMLDVYIYDYLLKRNLQSTAKAFMAEGKVAADPVAIDAPGGFLFEWWSVFW
DIFIARTNEKHSEVAAAYLEAQQIKAREHQQQMQMQQLQLIQHRHAQLQRTNASHPSLNG
PINTLNSDGILGHSTASVLAAKMYEERLKHPQSLDSEGSQLLDASRMALLKSAATNHAGQ
LVPGTPGNVSTTLQQIQSRNQQTMDIKSEGNMGVAQRSLPMDPSSLYGQGIIQPKPGLGG
AGLNQGVSGLPLKGWPLTGIDQLRPNLGAQMQKPFLSTQSQFQLMSPQQQQQFLAQAQAQ
GNLSNSSNYGDLDPRRYTALTRGGLNGKDGQPAGTDGCISSPMQSSSPKVRSDQEYLIKV
QQTSSQQPQEQQQQQSQQQQQQQSQQQQMQQSNRKRKQPTSSGAANSTGTGNTVGPSTNS
PPSTPSTHTPGDGLGMPGNMRHVPKNLVMYGADGTGLASSSNQMDDLEPFGDVGSLEDNV
ESFLANDDGDARDIFAALKRSPAEPNPAASKGFTFNEVNCLRTNNSKVVCCHFSSDGKIL
ASAGHEKKAVLWNMDTFQSQYTSEEHSLIITDVRFRPNSSQLATSSFDRTIKLWNAADPG
FCLHTFVGHNVQVTSLDFHPKKTDLLCSCDGNGEIRYWNLTQLSCMRAMKGGTAQVRFQP
NTGQFLAAAAETMVAIFDVETHSKKYTLQGHNTDVQSVCWDSSGEYLASVSQDLVKVWSI
SSGECIHEVSSNGNKFHSCVFHPSYANLLVIGGYQSLELWNMVKNQSMTIQAHEGLIAAL
AQSPVNGTVASASHDNSVKLWK

Transcript Sequence

Transcript ID

Os02t0813800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:34862557:34872880:-1 gene:Os02g0813800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-58 description:Similar to STYLOSA protein. (Os02t0813800-01);Non-protein coding transcript. (Os02t0813800-02)
Sequence

ATCTGGCTCCCTCTCTTCCTCTCCCTCCCTCCCTCCCTTCGCTCGCTTTCTCTCTCCTCC
CCTTCCCTTTCCTCCCCTTCCATCTCTCTCTCTCTTTCTCTCATCTCCTCCTCGCTTCTT
CTCAAGCAAAGCTAGCGGCGAGCTCGGAGTAGCGGCGCGCTCTCTCGTACGCCAACCGCC
CGGCTCCTCCTCCTCCTCCCCTTCGGGACCCCGTGCCCGAGCTCGCCGCCGCCGATCGGG
CATTGGATCCTTCCACCACCGGTGTTCGTTCGTAGCGGATTTTATTTTTGCGGGGTTTCT
CGGCATCCCCTGAGTCGCGGGATCGCGCCCAATCGATGGCGCAGAGCAACTGGGAAGCAG
ATAAGATGCTTGATGTGTATATCTATGACTATCTGCTGAAGAGGAACTTGCAGTCGACGG
CCAAGGCTTTCATGGCGGAGGGAAAGGTCGCCGCTGATCCAGTCGCAATTGATGCTCCTG
GAGGGTTTCTCTTTGAGTGGTGGTCTGTTTTTTGGGATATATTTATTGCAAGAACAAATG
AGAAGCATTCTGAGGTTGCAGCGGCATACCTAGAGGCACAGCAAATCAAAGCGAGAGAGC
ACCAACAGCAGATGCAGATGCAGCAGTTGCAACTAATACAACACAGACATGCTCAACTGC
AGCGAACTAATGCAAGTCATCCTTCACTTAATGGTCCAATAAACACCCTAAATTCTGATG
GCATTCTGGGGCATTCAACAGCTAGTGTTTTGGCTGCCAAGATGTATGAAGAGCGCTTGA
AGCACCCTCAATCCTTGGACTCTGAGGGATCACAGCTTCTTGATGCTAGTAGGATGGCTC
TTCTCAAGTCAGCTGCAACAAATCATGCAGGGCAATTAGTTCCCGGAACTCCCGGAAATG
TGTCTACAACGCTGCAACAAATCCAGTCTAGGAATCAACAAACTATGGATATAAAAAGTG
AAGGTAATATGGGTGTTGCCCAAAGATCTTTGCCCATGGACCCATCATCCTTATATGGAC
AGGGTATTATTCAGCCAAAACCTGGATTGGGCGGTGCAGGACTAAACCAAGGAGTAAGCG
GTCTACCATTGAAAGGGTGGCCATTAACTGGAATTGACCAATTGCGACCAAATTTAGGTG
CTCAAATGCAGAAGCCATTTCTTTCAACACAGTCACAGTTTCAACTTATGTCACCACAGC
AGCAGCAACAATTCTTAGCACAGGCCCAAGCACAAGGCAATCTTAGCAACTCAAGTAACT
ATGGGGATTTGGATCCCCGGAGATATACAGCACTAACCAGGGGTGGCTTGAATGGTAAGG
ATGGACAGCCTGCTGGAACTGATGGGTGTATTAGTTCCCCAATGCAATCCAGTTCACCCA
AAGTTAGGTCAGACCAAGAGTATCTCATAAAGGTACAACAGACATCTTCCCAGCAACCGC
AGGAACAGCAGCAGCAGCAGAGCCAGCAACAACAGCAGCAGCAAAGCCAGCAACAGCAAA
TGCAACAGAGCAATAGAAAAAGAAAGCAACCTACATCTTCAGGAGCAGCAAATAGTACTG
GAACAGGGAATACAGTTGGCCCTTCAACCAATTCTCCACCATCTACTCCATCCACGCATA
CCCCAGGAGATGGACTTGGGATGCCTGGCAATATGCGCCACGTCCCGAAAAATTTAGTGA
TGTATGGTGCTGACGGAACAGGACTAGCATCCTCTTCAAACCAAATGGATGATCTCGAGC
CATTTGGTGATGTTGGCTCTTTGGAAGATAATGTTGAATCATTCTTAGCCAATGATGATG
GAGATGCAAGGGATATTTTTGCTGCACTTAAAAGAAGTCCTGCAGAGCCTAACCCAGCGG
CTTCAAAAGGTTTTACCTTCAATGAGGTTAATTGTTTGCGCACGAACAATAGCAAAGTTG
TCTGTTGCCATTTTTCTTCAGATGGCAAGATATTGGCTAGCGCTGGACATGAAAAGAAGG
CTGTACTTTGGAACATGGACACCTTCCAGAGCCAGTATACATCAGAAGAACACAGCCTCA
TAATTACTGATGTCCGTTTCCGGCCTAATTCTTCCCAGCTGGCAACATCATCCTTTGATA
GAACTATTAAGCTGTGGAATGCTGCAGATCCTGGATTCTGTTTGCATACGTTTGTTGGGC
ATAATGTCCAAGTCACATCTTTAGATTTTCATCCAAAGAAGACGGACCTTTTGTGCTCTT
GTGATGGCAATGGTGAAATCCGGTACTGGAATCTGACCCAGCTTAGCTGCATGCGTGCCA
TGAAGGGAGGTACTGCCCAAGTTCGATTCCAACCTAACACTGGACAGTTTCTCGCAGCTG
CTGCGGAGACTATGGTTGCCATTTTTGATGTTGAAACGCACAGCAAAAAATACACACTAC
AGGGCCATAACACAGATGTGCAATCAGTGTGTTGGGACAGCAGTGGGGAGTACCTTGCCT
CTGTCAGTCAGGACTTGGTTAAGGTCTGGTCAATATCATCAGGAGAGTGCATTCATGAGG
TTAGCTCCAATGGAAACAAGTTCCACTCTTGTGTGTTCCACCCAAGCTATGCCAATCTCC
TTGTTATTGGAGGCTACCAGTCCCTGGAGCTATGGAACATGGTAAAGAACCAGAGCATGA
CGATACAAGCCCATGAAGGTCTAATTGCGGCCTTGGCGCAATCGCCAGTGAACGGGACGG
TGGCTTCTGCGAGCCACGACAACTCTGTCAAGTTGTGGAAGTAACAACAATAACGTACCT
AGAGATAAGAATAGCTGTTCCAGGTAATTGATACTGGATTTCTTCAGCCTAGGCTAGTCA
TAGAATGGAGGTGAGTTTGATGTACTGGTTGAGTTGTGTTACTATCTCAGAGGCAAATAA
GGAAGAGTAGGAGCCGGGCGATTGTCGCGGTTGAGCTGTTCAGTGCGTATTGCAGTGAGT
TTGTGGGAGGGGCTGTTTCTTTTTTTTTTTTTTTTTTTACCTTGATGATAGATGTTGATG
TAGCACAAAAGGAAGATAAGGAACGAAGGCCTAAAGTTGGCTCTCTGTTTCATGTTGTTA
ATGTTCTAGTATGAGATGTAAAATGTAACAATATTCGGTGTTTTAATGGGAACTCGCTGC
AATTTGTCCGGCGGTTGATAGATG