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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0800100-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:34075838:34078156:-1 gene:Os02g0800100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Proteasome maturation factor UMP1 family protein. (Os02t0800100-01)
Sequence

ATGGCGAGCGGCGGCGTGGTGAAGAAGGAGATCGGCGGGAACCACGACGTCCTCCGCTTC
GGCGTCAACGACAGCGTCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTC
CACAAGGATGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTACGGA
TCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAGTTCCAAAGGCCC
CCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGCACTGACTGGTTCCTTAGATGAT
TTTGGGTTTGAAGATTATCTTAACTTGCCCCAAGATTCTGAAAGCTTCCGTGCTCCCGAC
ATGCACCACGGAATGGAGGTTCGCCTCGGTTTGTCAAAGGGACCTGTTTGCCCTAGTTTC
AATTGA

Peptide Sequence

PEP ID

Os02t0800100-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:34075838:34078156:-1 gene:Os02g0800100 transcript:Os02t0800100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Proteasome maturation factor UMP1 family protein. (Os02t0800100-01)
Sequence

MASGGVVKKEIGGNHDVLRFGVNDSVKGDLAPPHPLQASVHKDAKFWADKKRFGAEAIYG
SAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSESFRAPD
MHHGMEVRLGLSKGPVCPSFN

Transcript Sequence

Transcript ID

Os02t0800100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:34075838:34078156:-1 gene:Os02g0800100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Proteasome maturation factor UMP1 family protein. (Os02t0800100-01)
Sequence

CGTCTCCCTTTCTTCTCCCCAAAGAAAGAAGCGAGAGAGAGAGAGAGAAAGCTTCGCAGG
CGACGATGGCGAGCGGCGGCGTGGTGAAGAAGGAGATCGGCGGGAACCACGACGTCCTCC
GCTTCGGCGTCAACGACAGCGTCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCA
GCGTCCACAAGGATGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCT
ACGGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAGTTCCAAA
GGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGCACTGACTGGTTCCTTAG
ATGATTTTGGGTTTGAAGATTATCTTAACTTGCCCCAAGATTCTGAAAGCTTCCGTGCTC
CCGACATGCACCACGGAATGGAGGTTCGCCTCGGTTTGTCAAAGGGACCTGTTTGCCCTA
GTTTCAATTGATTTCTCAAAAATGTATTTCTTGTCTTACACTGCGCTCCTCGTTCAGTAT
CTATATCGGTCTTTAGACCGTGACCGTGACCGTGACATGTAAGAACTATAGGTATTGCAT
CCGTTTGAGGAGTTCTAAAATCGAATTTAATGTTATCATGTTTGAACTTATGTCCGGTTT
GCTGGTTGCTGTGGTCGAATGCACTTAAGAAAATGATTTGCTCCCTGCATGGACATCTGG
GAATCTGGCCAGTTGGAGCGTGTACATAATGAGATGTCTATTATGCATTGGTTCTAC