Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0796400-00
CDS Infomation

cds chromosome:IRGSP-1.0:2:33857413:33859405:-1 gene:Os02g0796400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0796400-00)
Sequence

ATGGCCGCCGTCGTGCGCCGCTCGCGCCTTCTCGCCCTCCTCGTCGGCGCCTCCCGCCCA
AACCCTAGACCCTTCTGCTGCTCCTCCTCCTCCTCCTCCGCTCCTCCGGCGACTGCTCGC
GAGGACGGCGACGGCGGCGACCTACTGTCGCGGTGCCTCCTCCGGATCCCGAGGAAGAGC
GGGCGCGCCGCCGCGGCCGCCGCCGTCGAGAGATGGGCTCGGGAGCGCGGCCGCGTCTCG
CCGCCGGAGCTCCGCCGTGACGTCGTCCGGCTTCGCCGCGCGCGCCGCTACGAGCAAGCC
CTGGAGATTTTATCATGGATGGACTCGCACAATGATTTTAGACTATCGCCCTCAGATCAT
ATGGTTAGACTGGATTTGATTGCAAAAGTTCATGGTACTTCTCAAGCTGAGGAGTACTAC
AGAAAACTAAGTACTGCTGCTTCCAAGAAGGCCGCGTCATTCCCGCTTCTCCATTGCTAT
GTTACAGAAAGAAATGTGCAGAAAGCTGAAACCTTCATGGCTGAGCTGCAGAGATATGGA
CTGCCTGTCGATCCTCATTCTTTCAATGAAATTATGAAACTATATGTTGCAACGTGCCAG
TATGAGAAGGTCCTTAGTGTAATTTATCTGATGAAACGGAACAACATTCCAAGAAATGTT
CTGTCCTACAACATTTGGATGAATGCATGTGCTGAGGTCTCTGGCTTAGCCTCAGTACAA
TCAGCATTCAAGGAGATGCTGAATGATGACATGGTTGAGGTTGGTTGGAGCACATACTGT
ACATTAGCTAACATCTTCAAGAAGTATGGACAGAGCAGTAAAGCTCTTGCTTGCCTTAGA
ACGGCTGAAACAAAGTTGTCATCAACAGGGCGTTTAGGGTACTCTTTCATTATGACATGT
TATGCAGCCCTGAATGACAGAGATGGGGTTATTAGGCTGTGGGAGGCTAGTAAAATTGTT
CCAGGTAGAATCCCTGCTGCAAACTACATGTCTGCTATGGTATGCTTGATAAAAGTTGGC
GACATTGGTCGGGCCGAGTGGACCTTTGGAAGCTGGGAAGCAGAAAGCAAGAAGCACGAT
GTGCGGGTTTCAAATGTTCTCCTTGGTGCTTATGTGAGGAATGGATGGATCGAAAAGGCT
GAGAGGCTTCATCTCCACATGCTAGAGAAAGGTGCGCATCCGAATTACAAGACTTGGGAG
ATACTGATGGAGGGATTTGTTCAGAGTAAGCAGATGGATAAAGCTGTCAATGCCATGAAG
AAGGGCTTATCTCTGTTGAAGACTTGCCACTGGAGACCTCCACTTGAGCTGTTGGAGGCC
ATTGCAAAGTATTTCGAGGAGCAAGGCAGTGTGGAGGATGCAGATAGATTCATAAAGGTT
CTTCAAAAGTTCAACTTGACAAGCTTGCCCCTGTACAAGTCATTGCTTGGGGCATATATT
AATGCTGACATTGTGCCACAAAATATTCCTCAGATGATAGCAGGAGATCAAATAGATATG
GACGAAGAAATGGACCAATTGATCATACGTGCCAGCAAGATAGACATCACGTGA

Peptide Sequence

PEP ID

Os02t0796400-00
PEP Infomation

pep chromosome:IRGSP-1.0:2:33857413:33859405:-1 gene:Os02g0796400 transcript:Os02t0796400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0796400-00)
Sequence

MAAVVRRSRLLALLVGASRPNPRPFCCSSSSSSAPPATAREDGDGGDLLSRCLLRIPRKS
GRAAAAAAVERWARERGRVSPPELRRDVVRLRRARRYEQALEILSWMDSHNDFRLSPSDH
MVRLDLIAKVHGTSQAEEYYRKLSTAASKKAASFPLLHCYVTERNVQKAETFMAELQRYG
LPVDPHSFNEIMKLYVATCQYEKVLSVIYLMKRNNIPRNVLSYNIWMNACAEVSGLASVQ
SAFKEMLNDDMVEVGWSTYCTLANIFKKYGQSSKALACLRTAETKLSSTGRLGYSFIMTC
YAALNDRDGVIRLWEASKIVPGRIPAANYMSAMVCLIKVGDIGRAEWTFGSWEAESKKHD
VRVSNVLLGAYVRNGWIEKAERLHLHMLEKGAHPNYKTWEILMEGFVQSKQMDKAVNAMK
KGLSLLKTCHWRPPLELLEAIAKYFEEQGSVEDADRFIKVLQKFNLTSLPLYKSLLGAYI
NADIVPQNIPQMIAGDQIDMDEEMDQLIIRASKIDIT

Transcript Sequence

Transcript ID

Os02t0796400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:33857413:33859405:-1 gene:Os02g0796400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0796400-00)
Sequence

ATGGCCGCCGTCGTGCGCCGCTCGCGCCTTCTCGCCCTCCTCGTCGGCGCCTCCCGCCCA
AACCCTAGACCCTTCTGCTGCTCCTCCTCCTCCTCCTCCGCTCCTCCGGCGACTGCTCGC
GAGGACGGCGACGGCGGCGACCTACTGTCGCGGTGCCTCCTCCGGATCCCGAGGAAGAGC
GGGCGCGCCGCCGCGGCCGCCGCCGTCGAGAGATGGGCTCGGGAGCGCGGCCGCGTCTCG
CCGCCGGAGCTCCGCCGTGACGTCGTCCGGCTTCGCCGCGCGCGCCGCTACGAGCAAGCC
CTGGAGATTTTATCATGGATGGACTCGCACAATGATTTTAGACTATCGCCCTCAGATCAT
ATGGTTAGACTGGATTTGATTGCAAAAGTTCATGGTACTTCTCAAGCTGAGGAGTACTAC
AGAAAACTAAGTACTGCTGCTTCCAAGAAGGCCGCGTCATTCCCGCTTCTCCATTGCTAT
GTTACAGAAAGAAATGTGCAGAAAGCTGAAACCTTCATGGCTGAGCTGCAGAGATATGGA
CTGCCTGTCGATCCTCATTCTTTCAATGAAATTATGAAACTATATGTTGCAACGTGCCAG
TATGAGAAGGTCCTTAGTGTAATTTATCTGATGAAACGGAACAACATTCCAAGAAATGTT
CTGTCCTACAACATTTGGATGAATGCATGTGCTGAGGTCTCTGGCTTAGCCTCAGTACAA
TCAGCATTCAAGGAGATGCTGAATGATGACATGGTTGAGGTTGGTTGGAGCACATACTGT
ACATTAGCTAACATCTTCAAGAAGTATGGACAGAGCAGTAAAGCTCTTGCTTGCCTTAGA
ACGGCTGAAACAAAGTTGTCATCAACAGGGCGTTTAGGGTACTCTTTCATTATGACATGT
TATGCAGCCCTGAATGACAGAGATGGGGTTATTAGGCTGTGGGAGGCTAGTAAAATTGTT
CCAGGTAGAATCCCTGCTGCAAACTACATGTCTGCTATGGTATGCTTGATAAAAGTTGGC
GACATTGGTCGGGCCGAGTGGACCTTTGGAAGCTGGGAAGCAGAAAGCAAGAAGCACGAT
GTGCGGGTTTCAAATGTTCTCCTTGGTGCTTATGTGAGGAATGGATGGATCGAAAAGGCT
GAGAGGCTTCATCTCCACATGCTAGAGAAAGGTGCGCATCCGAATTACAAGACTTGGGAG
ATACTGATGGAGGGATTTGTTCAGAGTAAGCAGATGGATAAAGCTGTCAATGCCATGAAG
AAGGGCTTATCTCTGTTGAAGACTTGCCACTGGAGACCTCCACTTGAGCTGTTGGAGGCC
ATTGCAAAGTATTTCGAGGAGCAAGGCAGTGTGGAGGATGCAGATAGATTCATAAAGGTT
CTTCAAAAGTTCAACTTGACAAGCTTGCCCCTGTACAAGTCATTGCTTGGGGCATATATT
AATGCTGACATTGTGCCACAAAATATTCCTCAGATGATAGCAGGAGATCAAATAGATATG
GACGAAGAAATGGACCAATTGATCATACGTGCCAGCAAGATAGACATCACGTGAAAAGTA
AATGGGTAGGCTATGAACAGTTGCTGCTTATGAGCACACACGGCAAATATAACTCACCCG
ACTGTCTTTGTGGTTGCAGCCAAAAAACGCAGAATTACACTAAGAACCTGCAGATTAGAG
GGTGAACAGTGCACTGCGCTGCATTACTT