Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0789600-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:33547296:33550402:1 gene:Os02g0789600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DEM2. (Os02t0789600-01)
Sequence

ATGGGCGGCGCCCACAGCCGCGAGGACCTCGACCTCACCTCCTCCGACGACGAGGACGAC
GACGAGGAGTACGACGCCCAGACCGCCACCTCCGCCGCCTCTCGAGAGGACATCCTCCGG
ACCTCTACCCCCTCCTCCCTCGAGTTCCTCGACGCGAAGCTGAAAGCGCTCGATCTCAAG
TACCAGGCGCCGAACGCGGCGAAGCTGTACCTCCACGTCGGCGGCGCCTCCGCCTCCGCG
CGCTGGGTGCCGGCCGAGCGGCGGGCGACCTACGCCTTCGTCGACAAGGCGACGGCGGCG
GGCGACAGCGATTGTGGCGGCCCGAGGTGGGTTCTGGAGGTTGGTCCGGGTCCCAGGGTC
TCCGCCCCCGTCGGCCCGGCGCTACAGCTCAAGGCGCTCCCCGCGCAGCGCCGGGCCGAT
TTCGCCGCGGGCGGCTCCGTCTGGGCGCTGCGGCTGCCGACCGACGCCGCCTTCCGCCGA
TTCCGGCAGGAGTACGACCGGTGCCTGTTCGAGAACACGTATGGCGTCGAGGCCACGGAT
GAGGGCCGGAAGGAGGTGTTCGGCGCTGACTTCGCCGCGTGGGCGCGCCCCGGTGAGTCC
GACGACGCCGTCTGGGCCGACGCAGAGGACTCCTTCACCCCTCCCGTTGCGACCCCGGCG
AGAGACCTGCTCGAGGAGTTCGAGGAGGAGGCCGGGGACGGCAGCATCCAGAGCCTCGCG
CTGGGCGCGCTTGACAACAGCTTCTTGGTTGGAGGGTCAGGGATACAGGTGGTCAAGAAT
TTCCGGCATGGCGTGCACGGCAAGGGCGTCTCTGTGAGGATATCTGATGGCCGTGGTGGT
GGGAACGCGTACATGACACCGCAGAAGGCTCTGCTTATGCGTGGCGAGACGAATATGCTT
CTGATGAGCCCTGGAGAGACTGGCACTCGCCATTCCAATGGCGTCCATCATGTTGATATA
GAGACTGGCAAGGTTGTGGCTCAGTGGAGGTTTGAGAAGGATGGAACTGACATCACAATG
CGAGACATCGCCAACGACAGTAAGGGCGCGCAGCTGGAACCCTCTGGATCAACCTTCTTA
GGATTGGATGACAACCGGCTATGCCGGTGGGATATGAGGGATTCCAGGGGCAGGGTGCAA
ACAATTGGGAGCTCATCTGAGTCACCGGTGCTGCAATGGTCGCAGGGCCATCAGTTCTCA
AGGGGCACCAATTTCCAATGCTTTGCAAGTACAGGGGATGGTTCGATTGTGGTTGGTTCT
GTGGATGGCAAGATTAGGCTCTATTCCAAGAGTTCGATGCGGATGGCGAAGACAGCATTC
CCAGGGCTTGGATCACCAATCACACATGTTGATGTTACTTATGATGGGAAGTGGATTCTG
GGCACTACTGATACATATTTGATCTTGATCTGTACCATCTTTAAGGACAAGGATGGTAAA
GAGAAGACAGGATTCAGTGGGCGTATGGGAAATAGGATTGCAGCACCAAGATTGCTGAAG
CTCTCCCCATTGGATTCAATTTTGGCAGGGTCCGAGAACAAATTCCATGGCGGGCAGTTC
TCTTGGGTAACAGAGAATGGGAAGCAAGAAAAGCATCTTGTTGCGACAGTTGGCAAATTT
AGTGTCATTTGGAACTTTCAGCAGGTGAAGGACAGCAACCATGAGTGCTACCGCGATCAG
GAAGGGCTCAAGAGCTGCTATTGTTACAAAGTTGTCCTGAAAGACGAATCCATTGTTGAC
AGCCGTTTCATGCACGAGAAATTTGCAACAACCGACTCCCCTGAGGCTCCTCTGGTGGTG
GCAACACCCATGAAAGTCAGCTCCTTCAGTTTAGCCAATAGACGATTACACTGA

Peptide Sequence

PEP ID

Os02t0789600-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:33547296:33550402:1 gene:Os02g0789600 transcript:Os02t0789600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DEM2. (Os02t0789600-01)
Sequence

MGGAHSREDLDLTSSDDEDDDEEYDAQTATSAASREDILRTSTPSSLEFLDAKLKALDLK
YQAPNAAKLYLHVGGASASARWVPAERRATYAFVDKATAAGDSDCGGPRWVLEVGPGPRV
SAPVGPALQLKALPAQRRADFAAGGSVWALRLPTDAAFRRFRQEYDRCLFENTYGVEATD
EGRKEVFGADFAAWARPGESDDAVWADAEDSFTPPVATPARDLLEEFEEEAGDGSIQSLA
LGALDNSFLVGGSGIQVVKNFRHGVHGKGVSVRISDGRGGGNAYMTPQKALLMRGETNML
LMSPGETGTRHSNGVHHVDIETGKVVAQWRFEKDGTDITMRDIANDSKGAQLEPSGSTFL
GLDDNRLCRWDMRDSRGRVQTIGSSSESPVLQWSQGHQFSRGTNFQCFASTGDGSIVVGS
VDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTIFKDKDGK
EKTGFSGRMGNRIAAPRLLKLSPLDSILAGSENKFHGGQFSWVTENGKQEKHLVATVGKF
SVIWNFQQVKDSNHECYRDQEGLKSCYCYKVVLKDESIVDSRFMHEKFATTDSPEAPLVV
ATPMKVSSFSLANRRLH

Transcript Sequence

Transcript ID

Os02t0789600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:33547296:33550402:1 gene:Os02g0789600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DEM2. (Os02t0789600-01)
Sequence

CATCTCCGCTCCATTCCCCCCTCCCGTGTCGCAGCGAGAAGCATCCATCGGAATTCTCGT
CGACCACCGCAACCGCCATGGGCGGCGCCCACAGCCGCGAGGACCTCGACCTCACCTCCT
CCGACGACGAGGACGACGACGAGGAGTACGACGCCCAGACCGCCACCTCCGCCGCCTCTC
GAGAGGACATCCTCCGGACCTCTACCCCCTCCTCCCTCGAGTTCCTCGACGCGAAGCTGA
AAGCGCTCGATCTCAAGTACCAGGCGCCGAACGCGGCGAAGCTGTACCTCCACGTCGGCG
GCGCCTCCGCCTCCGCGCGCTGGGTGCCGGCCGAGCGGCGGGCGACCTACGCCTTCGTCG
ACAAGGCGACGGCGGCGGGCGACAGCGATTGTGGCGGCCCGAGGTGGGTTCTGGAGGTTG
GTCCGGGTCCCAGGGTCTCCGCCCCCGTCGGCCCGGCGCTACAGCTCAAGGCGCTCCCCG
CGCAGCGCCGGGCCGATTTCGCCGCGGGCGGCTCCGTCTGGGCGCTGCGGCTGCCGACCG
ACGCCGCCTTCCGCCGATTCCGGCAGGAGTACGACCGGTGCCTGTTCGAGAACACGTATG
GCGTCGAGGCCACGGATGAGGGCCGGAAGGAGGTGTTCGGCGCTGACTTCGCCGCGTGGG
CGCGCCCCGGTGAGTCCGACGACGCCGTCTGGGCCGACGCAGAGGACTCCTTCACCCCTC
CCGTTGCGACCCCGGCGAGAGACCTGCTCGAGGAGTTCGAGGAGGAGGCCGGGGACGGCA
GCATCCAGAGCCTCGCGCTGGGCGCGCTTGACAACAGCTTCTTGGTTGGAGGGTCAGGGA
TACAGGTGGTCAAGAATTTCCGGCATGGCGTGCACGGCAAGGGCGTCTCTGTGAGGATAT
CTGATGGCCGTGGTGGTGGGAACGCGTACATGACACCGCAGAAGGCTCTGCTTATGCGTG
GCGAGACGAATATGCTTCTGATGAGCCCTGGAGAGACTGGCACTCGCCATTCCAATGGCG
TCCATCATGTTGATATAGAGACTGGCAAGGTTGTGGCTCAGTGGAGGTTTGAGAAGGATG
GAACTGACATCACAATGCGAGACATCGCCAACGACAGTAAGGGCGCGCAGCTGGAACCCT
CTGGATCAACCTTCTTAGGATTGGATGACAACCGGCTATGCCGGTGGGATATGAGGGATT
CCAGGGGCAGGGTGCAAACAATTGGGAGCTCATCTGAGTCACCGGTGCTGCAATGGTCGC
AGGGCCATCAGTTCTCAAGGGGCACCAATTTCCAATGCTTTGCAAGTACAGGGGATGGTT
CGATTGTGGTTGGTTCTGTGGATGGCAAGATTAGGCTCTATTCCAAGAGTTCGATGCGGA
TGGCGAAGACAGCATTCCCAGGGCTTGGATCACCAATCACACATGTTGATGTTACTTATG
ATGGGAAGTGGATTCTGGGCACTACTGATACATATTTGATCTTGATCTGTACCATCTTTA
AGGACAAGGATGGTAAAGAGAAGACAGGATTCAGTGGGCGTATGGGAAATAGGATTGCAG
CACCAAGATTGCTGAAGCTCTCCCCATTGGATTCAATTTTGGCAGGGTCCGAGAACAAAT
TCCATGGCGGGCAGTTCTCTTGGGTAACAGAGAATGGGAAGCAAGAAAAGCATCTTGTTG
CGACAGTTGGCAAATTTAGTGTCATTTGGAACTTTCAGCAGGTGAAGGACAGCAACCATG
AGTGCTACCGCGATCAGGAAGGGCTCAAGAGCTGCTATTGTTACAAAGTTGTCCTGAAAG
ACGAATCCATTGTTGACAGCCGTTTCATGCACGAGAAATTTGCAACAACCGACTCCCCTG
AGGCTCCTCTGGTGGTGGCAACACCCATGAAAGTCAGCTCCTTCAGTTTAGCCAATAGAC
GATTACACTGACAGTCTTATTTTGCTTTGCGTATCATGGTGGGAGAATCTACTGGTTTTT
GTGTAGCTCACTGCTGTTCCTTTCGTGGTGCGAGAATCTACAGGTTCACTGCTGTTCCTA
TTGGTTCATTTGTTACTTGATTTTGGTGTAGCAGGCATGTTGATAATACTAGTACTCTTT
GTGAAGATTGCTGGAGTTGTAATACTTGTTAGTTGTAACTAGGTTTCGGTGTACTCTTTG
TAAATGTTGACGATAGCGTTCTGGGTGAAGACCTAATCTCTTCTGGGACTGGAGTTGTAA
CT